View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5445_high_12 (Length: 374)
Name: NF5445_high_12
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 32620567 - 32620236
Alignment:
| Q |
13 |
atactacctagatcagtagcatgattagctacctcatgaaactcatccacaacaaccttagaatctaggcagaaatcaacagaatctaaatgcaatgctg |
112 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32620567 |
atactacctagatcagtagcatgattggctacctcatgaaactcatccacagcaaccttagaatctaggcagaaatcaacagaatctaaatgcaatgctg |
32620468 |
T |
|
| Q |
113 |
ctacccattgaattgcatgattaaggccaagtgcttcaccaatgtctactgcacaatatggctgaaatgacagagttcaagcttgcacaaaacctcctgc |
212 |
Q |
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|||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
32620467 |
ctaccc-ttgaattgcatgatcaaggccaagcgcttcaccaatgtctactgcacaatatgactgaaatgacagagttcgagcttgcacaaaacctcctgc |
32620369 |
T |
|
| Q |
213 |
agagtcacgtatacacatgccaatgccgactgtgttagcagatgagggaaaggatgcatccacgttacacttgaaccgtcctgggtgcggccgctgccat |
312 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||| | ||||||||||||| |
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| T |
32620368 |
agagtcacgtatacacatgccgatgccgactttgttagcagaggaggaaaaggatgcatccatattacacttgaaccgtcctggattcggccgctgccat |
32620269 |
T |
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| Q |
313 |
tcaacattcctgctactgctcacggtgacagca |
345 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |
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| T |
32620268 |
tcaacattgctgctactgctcacggtgacagca |
32620236 |
T |
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