View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5445_high_15 (Length: 314)

Name: NF5445_high_15
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5445_high_15
NF5445_high_15
[»] chr1 (6 HSPs)
chr1 (41-314)||(44232552-44232826)
chr1 (9-44)||(15512890-15512925)
chr1 (9-44)||(28949073-28949108)
chr1 (9-50)||(31305271-31305312)
chr1 (8-44)||(51996913-51996949)
chr1 (12-44)||(12844000-12844032)
[»] chr5 (1 HSPs)
chr5 (9-44)||(39690595-39690630)
[»] chr2 (3 HSPs)
chr2 (9-44)||(17663584-17663619)
chr2 (12-47)||(9154106-9154141)
chr2 (12-44)||(38449827-38449859)
[»] chr6 (1 HSPs)
chr6 (9-44)||(19838891-19838926)
[»] chr4 (2 HSPs)
chr4 (9-44)||(12624656-12624691)
chr4 (12-44)||(26203090-26203122)
[»] chr7 (2 HSPs)
chr7 (10-44)||(29636151-29636185)
chr7 (12-45)||(25098243-25098276)
[»] chr3 (1 HSPs)
chr3 (9-46)||(46435842-46435879)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 41 - 314
Target Start/End: Complemental strand, 44232826 - 44232552
Alignment:
Q  41 agtaattcaatacagttatgccccctctaagagagaataactattttttattgcttcaatattggaataaatactaggcgaaaaagatgtaaatgctata 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44232826 agtaattcaatacagttatgccccctctaagagagaataactattttttattgcttcaatattggaataaatactaggcgaaaaagatataaatgctata 44232727  T
Q  141 atcattcaaaaattagtattttagttaaaacactttatgactttgttgaggagctaagatcctctccatctccgataataaatgacaatgtttattattc 240  Q
    |||||||||||||||| || ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44232726 atcattcaaaaattaggatgttacttaaaacagtttatgactttgttgaggagctaagatcctctccatctccgataataaatgacaatgtttattattc 44232627  T
Q  241 tctccgttttaaaatgaactttgttgaagtttttacaaaatggagagaatct-aactctttgttgacacaatgac 314  Q
    |||||||||||||||||||||  || |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44232626 tctccgttttaaaatgaacttcatttaagtttttacaaaatggagagaatctcaactctttgttgacacaatgac 44232552  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 15512890 - 15512925
Alignment:
Q  9 agcaaaggggggttacatatagggacggagggagta 44  Q
    ||||||||||||||||||||||||||||||||||||    
T  15512890 agcaaaggggggttacatatagggacggagggagta 15512925  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 28949073 - 28949108
Alignment:
Q  9 agcaaaggggggttacatatagggacggagggagta 44  Q
    ||||||||||||||||||||||||||||||||||||    
T  28949073 agcaaaggggggttacatatagggacggagggagta 28949108  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 31305312 - 31305271
Alignment:
Q  9 agcaaaggggggttacatatagggacggagggagtaattcaa 50  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  31305312 agcaaaaggggtttacatatagggacggagggagtaattcaa 31305271  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 51996949 - 51996913
Alignment:
Q  8 tagcaaaggggggttacatatagggacggagggagta 44  Q
    |||||||||||| ||||||||||||||||||||||||    
T  51996949 tagcaaagggggtttacatatagggacggagggagta 51996913  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 12844032 - 12844000
Alignment:
Q  12 aaaggggggttacatatagggacggagggagta 44  Q
    |||||| ||||||||||||||||||||||||||    
T  12844032 aaagggtggttacatatagggacggagggagta 12844000  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 39690595 - 39690630
Alignment:
Q  9 agcaaaggggggttacatatagggacggagggagta 44  Q
    ||||||||||||||||||||||||||||||||||||    
T  39690595 agcaaaggggggttacatatagggacggagggagta 39690630  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 17663619 - 17663584
Alignment:
Q  9 agcaaaggggggttacatatagggacggagggagta 44  Q
    ||||||||||||||||||||||||||||||||||||    
T  17663619 agcaaaggggggttacatatagggacggagggagta 17663584  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 9154141 - 9154106
Alignment:
Q  12 aaaggggggttacatatagggacggagggagtaatt 47  Q
    |||||| |||||||||||||||||||||||||||||    
T  9154141 aaagggtggttacatatagggacggagggagtaatt 9154106  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 38449827 - 38449859
Alignment:
Q  12 aaaggggggttacatatagggacggagggagta 44  Q
    ||||| |||||||||||||||||||||||||||    
T  38449827 aaaggagggttacatatagggacggagggagta 38449859  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 19838926 - 19838891
Alignment:
Q  9 agcaaaggggggttacatatagggacggagggagta 44  Q
    ||||||||||| ||||||||||||||||||||||||    
T  19838926 agcaaagggggattacatatagggacggagggagta 19838891  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 12624691 - 12624656
Alignment:
Q  9 agcaaaggggggttacatatagggacggagggagta 44  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12624691 agcaacggggggttacatatagggacggagggagta 12624656  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 26203122 - 26203090
Alignment:
Q  12 aaaggggggttacatatagggacggagggagta 44  Q
    |||||||| ||||||||||||||||||||||||    
T  26203122 aaagggggcttacatatagggacggagggagta 26203090  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 29636151 - 29636185
Alignment:
Q  10 gcaaaggggggttacatatagggacggagggagta 44  Q
    |||||||||| ||||||||||||||||||||||||    
T  29636151 gcaaagggggtttacatatagggacggagggagta 29636185  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 25098276 - 25098243
Alignment:
Q  12 aaaggggggttacatatagggacggagggagtaa 45  Q
    |||||| |||||||||||||||||||||||||||    
T  25098276 aaagggtggttacatatagggacggagggagtaa 25098243  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 46435842 - 46435879
Alignment:
Q  9 agcaaaggggggttacatatagggacggagggagtaat 46  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  46435842 agcaaagggggtttacatattgggacggagggagtaat 46435879  T

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