View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5445_high_17 (Length: 304)
Name: NF5445_high_17
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 27 - 290
Target Start/End: Complemental strand, 43583958 - 43583695
Alignment:
| Q |
27 |
gatatatcagccatactctaatcttgtgtctagtgctcataaacctggtgacaagatttgccaacaactggaattccacgtgagttacttgtggaattca |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
43583958 |
gatatatcagccatactctaatcttgtgtctagtgctcataaacctggtgacaagatttgccaacaactggatttccatttgagttacttgtggaattca |
43583859 |
T |
|
| Q |
127 |
aaatgagtgaacagaaactcatgaatcatgggtcataatacatcacatattggttgtttttgttgaggtctatttatactaaggcaacatgtgatatggt |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43583858 |
aaatgagtgaacagaaactcatgaatcatgggtcataatacatcacatattggttgtttttgttgaggtctatctatactaaggcaacatgtgatatggt |
43583759 |
T |
|
| Q |
227 |
cagctaattggagggatcggattcggtacatttaaaaaacgcgcagttacatgtattaacatat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43583758 |
cagctaattggagggatcggattcggtacatttaaaaaacgcgcagttacatgtattaacatat |
43583695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 9752255 - 9752294
Alignment:
| Q |
28 |
atatatcagccatactctaatcttgtgtctagtgctcata |
67 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9752255 |
atatatcagctatactctaatcttgtgtctagtgctcata |
9752294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 12783604 - 12783644
Alignment:
| Q |
27 |
gatatatcagccatactctaatcttgtgtctagtgctcata |
67 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12783604 |
gatatatcagctatactctaatcttgtgtctagtgctcata |
12783644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University