View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5445_high_18 (Length: 287)
Name: NF5445_high_18
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445_high_18 |
 | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 26131846 - 26131588
Alignment:
| Q |
16 |
caagttgttagggatcgcaaaggtgaaattcttcagcaaacctttgtttgttcatgtcaaggatacagggaggataggggactaactatggaaacccgaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26131846 |
caagttgttagggatcgcaaaggtgaaattcttcagcaaacctttgtttgttcatgtcaaggatacagggaggataggggactaactatggaaacccgaa |
26131747 |
T |
|
| Q |
116 |
agcacgagcaaaaaattgaaacaagatgtgggtgtaacgcaaaatttcgagtccatttagatattttgtcaaggcattggtatgttactggatttgaaat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26131746 |
agcacgagcaaaaaattgaaacaagatgtgggtgtaatgcaaaatttcgagtccatttagatattttgtcaaggcattggtatgttactggatttgaaat |
26131647 |
T |
|
| Q |
216 |
tgatcacaatcatgatttgcttggtggtgctttgtgtggattgctaccggcgtatagaa |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26131646 |
tgatcacaatcatgatttgcttggtggtgctttgtgtggattgctaccggcgtatagaa |
26131588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 51 - 224
Target Start/End: Complemental strand, 37553821 - 37553649
Alignment:
| Q |
51 |
gcaaacctttgtttgttcatgtcaaggatacagggaggataggggactaactatggaaacccgaaagcacgagcaaaaaattgaaacaagatgtgggtgt |
150 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||||||| ||| ||||||||||| |||| ||||||| ||||||| || ||||||||| ||||||| |
|
|
| T |
37553821 |
gcaaacctttgcatgttcgtgtcaaggatagtgggaggatatggggctaactatggacacccaaaagcaccagcaaaacat-gaaacaagacgtgggtgc |
37553723 |
T |
|
| Q |
151 |
aacgcaaaatttcgagtccatttagatattttgtcaaggcattggtatgttactggatttgaaattgatcacaa |
224 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
37553722 |
aatgcaaaatttcaagtccatttagatattttgtcaaggcattggtatgttactgtatttaaatttgatcacaa |
37553649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 58112 - 57951
Alignment:
| Q |
22 |
gttagggatcgcaaaggtgaaattcttcagcaaacctttgtttgttcatgtcaaggatacagggaggataggggactaactatggaaacccgaaagcacg |
121 |
Q |
| |
|
||||||||||| || |||||| | |||||||||| ||||||||||||||||||||| || |||||||||||| |||| | |||||||||||||| || |
|
|
| T |
58112 |
gttagggatcggaatggtgaagtagttcagcaaacttttgtttgttcatgtcaaggactcaaggaggatagggggttaaccaaggaaacccgaaagcgcg |
58013 |
T |
|
| Q |
122 |
agcaaaaaattgaaacaagatgtgggtgtaacgcaaaatttcgagtccatttagatattttg |
183 |
Q |
| |
|
||| ||||| |||||||||||||| |||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
58012 |
agccaaaaaatgaaacaagatgtgagtgtaatgcaaaatttcgagtctatttagatattttg |
57951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 21860131 - 21860231
Alignment:
| Q |
83 |
gggaggataggggactaactatggaaacccgaaagcacgagcaaaaaattgaaacaagatgtgggtgtaacgcaaaatttcgagtccatttagatatttt |
182 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21860131 |
gggaggatagggggttaaccatggaaacccgaaagcgcgagccaaaaaatgaaacaagatgtgggtgtaatgcaaaatttcgagtccatttagatatttt |
21860230 |
T |
|
| Q |
183 |
g |
183 |
Q |
| |
|
| |
|
|
| T |
21860231 |
g |
21860231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 11009703 - 11009787
Alignment:
| Q |
55 |
acctttgtttgttcatgtcaaggatacagggaggataggggactaactatggaaacccgaaagcacgagcaaaaaattgaaacaa |
139 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| |||| ||||| |||||||| |
|
|
| T |
11009703 |
acctttgtttgttcatgtcaaggttacagggaggatagggggttaactatggaaaaccgaaagcgtgagccaaaaaatgaaacaa |
11009787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University