View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5445_high_2 (Length: 544)
Name: NF5445_high_2
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 19 - 526
Target Start/End: Complemental strand, 37163464 - 37162957
Alignment:
| Q |
19 |
cagttatcattcaattttatttgacacggttaattatcattcaatgtttttatgattgttgaacctaaactctctcgctacaatgtgtttgattatattt |
118 |
Q |
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| T |
37163464 |
cagttatcattcaattttatttgacacggttaattatcattcaatgtttttatgattgttgaacctaaactctctcgctacaatgtgtttgattatattt |
37163365 |
T |
|
| Q |
119 |
accacgcaggaagtagaactgatggaagaaaaccgaagattgaaacatgtggtaaactttttcaaactcttgtgtatttgcctctatatgggtcgattaa |
218 |
Q |
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| T |
37163364 |
accacgcaggaagtggaactgatggaagaaaaccgaagattgaaacatgtggtaaactttttcaaactcttgtgtatttgcctctatatgggtcgattaa |
37163265 |
T |
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| Q |
219 |
ttcgcagcagcgtagtaatatatggaatacatgtgaattttaggtaccagaccttataaatgtacgatggcaacaatcattggaaactgttatcagtggt |
318 |
Q |
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| T |
37163264 |
ttcgcagcagcatagtaatatatggaatacatgtgaattttaggtaccagaccttataaatgtacgatggcaacaatcattggaaactgttatcagtggt |
37163165 |
T |
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| Q |
319 |
tcgtctttttctcttgaagacgatggcagtgacacttctctcaagttggggttagtttagtttcttttaactatcatatagtgttgggtcttgctaacga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37163164 |
tcgtctttttctcttgaagacgatggcagtgacacttctctcaagttggggttagtttagtttcttttaactatcatatagtgttgggtcttgctaacca |
37163065 |
T |
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| Q |
419 |
gtgttagggggattggttaaggaattctttaatagaaattttgaattgaactttctgtttgctaagaggtattataaaaactacttcatttgagttcgtc |
518 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37163064 |
gtgttagggggattgattaaggaattctttaatagaaattttgaattgaactttctatttgttaagaggtattataaaaactacttcatttgagttcgtc |
37162965 |
T |
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| Q |
519 |
tctctgtg |
526 |
Q |
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| T |
37162964 |
tctctgtg |
37162957 |
T |
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