View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5445_high_23 (Length: 221)
Name: NF5445_high_23
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 38 - 205
Target Start/End: Original strand, 47986560 - 47986728
Alignment:
| Q |
38 |
gttatgagaagtttttgaagcaaagtttatctaccttcagtgccacaagttccctcattttgacttaagttctca-tggcgcatgnnnnnnngtagtcca |
136 |
Q |
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| T |
47986560 |
gttatgagaagtttttgaagcaaagtttatctaccttcagtgccacaagttccctcattttgacttaagttctcattggcgcatgtttttttgtagtcca |
47986659 |
T |
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| Q |
137 |
gggtaaggatgaagaaaatgttcaaacaaccaaactctagtggagaatctccacatacagctttaaaac |
205 |
Q |
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| T |
47986660 |
gggtaaggatgaagaaaatgttaaaacaaccaaactctagtggaaaatctccacatacagctttaaaac |
47986728 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37182273 - 37182310
Alignment:
| Q |
1 |
aacttttggaaagataggggtccataaccgcaattaag |
38 |
Q |
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| T |
37182273 |
aacttttgaaaagataggggtccataaccgcaattaag |
37182310 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20630391 - 20630354
Alignment:
| Q |
1 |
aacttttggaaagataggggtccataaccgcaattaag |
38 |
Q |
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| T |
20630391 |
aacttttggaaagataggggtccataagtgcaattaag |
20630354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 40594667 - 40594699
Alignment:
| Q |
143 |
ggatgaagaaaatgttcaaacaaccaaactcta |
175 |
Q |
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| T |
40594667 |
ggatgaagaaaatgttcaaacaaccaagctcta |
40594699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30288246 - 30288214
Alignment:
| Q |
1 |
aacttttggaaagataggggtccataaccgcaa |
33 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
30288246 |
aacttctggaaagataggggtccataaccgcaa |
30288214 |
T |
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