View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5445_high_4 (Length: 529)

Name: NF5445_high_4
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5445_high_4
NF5445_high_4
[»] chr1 (7 HSPs)
chr1 (295-511)||(52077356-52077572)
chr1 (296-511)||(3616071-3616287)
chr1 (141-229)||(52077624-52077704)
chr1 (137-229)||(3616352-3616436)
chr1 (171-227)||(12666941-12666996)
chr1 (1-34)||(52077842-52077875)
chr1 (2-34)||(3616566-3616598)
[»] chr7 (3 HSPs)
chr7 (296-510)||(16756567-16756781)
chr7 (137-210)||(16756443-16756516)
chr7 (1-33)||(16756280-16756312)
[»] chr6 (1 HSPs)
chr6 (394-506)||(7309443-7309553)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 295 - 511
Target Start/End: Complemental strand, 52077572 - 52077356
Alignment:
Q  295 ctggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatc 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  52077572 ctggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacaac 52077473  T
Q  395 cctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttcctt 494  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52077472 cctttcacaaaaccaattcatgttttctctctcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttcctt 52077373  T
Q  495 ctctctgtcgagcacag 511  Q
    |||||||||||||||||    
T  52077372 ctctctgtcgagcacag 52077356  T

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Target: chr1; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 296 - 511
Target Start/End: Complemental strand, 3616287 - 3616071
Alignment:
Q  296 tggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatcc 395  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  3616287 tggttccttttagaaacaagattagtatttacaattaacccataaaaaatattattattaattctggttgttattaactattgttcatcgatctacaacc 3616188  T
Q  396 ctttcac-aaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttcctt 494  Q
    ||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  3616187 ctttcacaaaaaccaattcatgttttctctctcaacaaacagtacataatttctcttatcactcactgtcgccgtttcctttctgcttcttcccttcctt 3616088  T
Q  495 ctctctgtcgagcacag 511  Q
    |||||||||||||||||    
T  3616087 ctctctgtcgagcacag 3616071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 52077704 - 52077624
Alignment:
Q  141 tctccaggaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcatccctacaccatcatcactg 229  Q
    ||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||||||||    
T  52077704 tctccaggaatcttcatatcttcttctcccaaattcat--------cacacaccaccatcataaattcatccctacaccaccatcactg 52077624  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 3616436 - 3616352
Alignment:
Q  137 ttcatctccaggaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcatccctacaccatcatcactg 229  Q
    ||||||||||||||||||||||||||||||||||||||        |||||| ||||| ||||||||||||||||| ||||||| ||||||||    
T  3616436 ttcatctccaggaatcttcatatcttcttctcccaaat--------tcatcagacaccgccatcataaattcatccatacaccaccatcactg 3616352  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 12666996 - 12666941
Alignment:
Q  171 aaattcataaattcatcacacaccaccatcataaattcatccctacaccatcatcac 227  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  12666996 aaattcataaat-catcacacaccaccatcataaattcatcactacaccaccatcac 12666941  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 52077875 - 52077842
Alignment:
Q  1 catcaccattgatttctattaataataaacccag 34  Q
    ||||||||||||||||||||||||||||||||||    
T  52077875 catcaccattgatttctattaataataaacccag 52077842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 3616598 - 3616566
Alignment:
Q  2 atcaccattgatttctattaataataaacccag 34  Q
    |||||||||||||||||||||||||||||||||    
T  3616598 atcaccattgatttctattaataataaacccag 3616566  T

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Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 296 - 510
Target Start/End: Original strand, 16756567 - 16756781
Alignment:
Q  296 tggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatcc 395  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||    
T  16756567 tggttccttttagaatcaagatttgtatttacgattaacccataaaaaatattattattaattttggttgttattaactattgttcatcgatctacaacc 16756666  T
Q  396 ctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttccttc 495  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  16756667 ctttcacaaaaccaattcatgttttctctctcaacaaacagtatataatttctcttatcactcactatcgttgtttccttcctgcttcttcccttccttc 16756766  T
Q  496 tctctgtcgagcaca 510  Q
    |||||||||||||||    
T  16756767 tctctgtcgagcaca 16756781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 16756443 - 16756516
Alignment:
Q  137 ttcatctccaggaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcat 210  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16756443 ttcatctccatgaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcat 16756516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 16756280 - 16756312
Alignment:
Q  1 catcaccattgatttctattaataataaaccca 33  Q
    |||||||||||||||||||||||||||||||||    
T  16756280 catcaccattgatttctattaataataaaccca 16756312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 394 - 506
Target Start/End: Original strand, 7309443 - 7309553
Alignment:
Q  394 ccctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttcct 493  Q
    |||||||||||||| | ||||||||||||||  ||||||| |||||||||||||||||| |||  ||| ||  ||||||||||| ||||||||  |||||    
T  7309443 ccctttcacaaaacaagttcatgttttctct--caacaaaaagtatataatttctcttaccaccaactctcaccgtttcctttcagcttcttcttttcct 7309540  T
Q  494 tctctctgtcgag 506  Q
    |||||||||||||    
T  7309541 tctctctgtcgag 7309553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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