View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5445_high_8 (Length: 479)
Name: NF5445_high_8
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 16 - 469
Target Start/End: Original strand, 31869358 - 31869811
Alignment:
| Q |
16 |
cactcccaatataattatagtgtaaaatctcatgcttatgtcaaagccacttcaagcttagcacagagcaaacctaatccactacaataatttcctctct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31869358 |
cactcccaatataattatagtgtaaaatctcatgcttatgtcaaagccacttcaagcttagcacagagcaaacctaatccactacaataatttcctctct |
31869457 |
T |
|
| Q |
116 |
tgaatattgtaatattccatgctgtgttttttgatgtatataaatgagtaccattctgatacttgttcactctcaagtgaagaaaagagaatacaagttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31869458 |
tgaatattgtaatattccatgctgtgttttttgatgtatataaatgagtaccattctgatacttgttcactctcaagtgaagaaaagagaatacaagttg |
31869557 |
T |
|
| Q |
216 |
gaacaaaaatgaaggtgagtacaattgagagtggtgaaatttcaaaaggagcatcatccccaagaaaagggatgaagagagggctctcaataatggattt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31869558 |
gaacaaaaatgaaggtgagtacaattgagagtggtgaaatttcaaaaggagcatcatccccaagaaaagggatgaagagagggctctcaataatggattt |
31869657 |
T |
|
| Q |
316 |
tattttgagaatttttgcagctatgagcacacttggaagtgcattgagtatgggaacagcaaagcaaactatgccttttgctacacgttttgttagattc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31869658 |
tattttgagaatttttgcagctatgagcacacttggaagtgcattgagtatgggaacagcaaagcaaactatgccttttgctacacgttttgttagattc |
31869757 |
T |
|
| Q |
416 |
aaagtttcatttcatgaccttccaacatttttgtaagtcatcactattcctatg |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31869758 |
aaagtttcatttcatgaccttccaacatttttgtaagtcatcactattcctatg |
31869811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University