View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5445_low_10 (Length: 420)

Name: NF5445_low_10
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5445_low_10
NF5445_low_10
[»] chr2 (3 HSPs)
chr2 (20-378)||(1242656-1242999)
chr2 (243-378)||(5051306-5051441)
chr2 (243-378)||(36592822-36592957)
[»] chr6 (2 HSPs)
chr6 (243-378)||(22696464-22696599)
chr6 (303-378)||(24045613-24045688)
[»] chr7 (4 HSPs)
chr7 (251-378)||(40074310-40074437)
chr7 (243-378)||(36934161-36934296)
chr7 (243-378)||(26199702-26199837)
chr7 (243-360)||(5892950-5893067)
[»] chr1 (2 HSPs)
chr1 (245-378)||(27109768-27109901)
chr1 (243-316)||(32946941-32947014)
[»] chr3 (4 HSPs)
chr3 (243-378)||(25498758-25498893)
chr3 (243-378)||(51056834-51056968)
chr3 (283-378)||(38258744-38258839)
chr3 (243-378)||(49358497-49358632)
[»] scaffold0005 (1 HSPs)
scaffold0005 (243-374)||(47442-47573)
[»] chr4 (6 HSPs)
chr4 (243-374)||(14792158-14792289)
chr4 (243-374)||(12888167-12888298)
chr4 (243-378)||(18357013-18357148)
chr4 (243-378)||(18431659-18431794)
chr4 (243-378)||(51407335-51407468)
chr4 (245-378)||(3915235-3915368)
[»] chr5 (2 HSPs)
chr5 (243-378)||(33758088-33758221)
chr5 (243-378)||(9436337-9436472)
[»] chr8 (3 HSPs)
chr8 (243-378)||(38149525-38149660)
chr8 (243-337)||(20518976-20519070)
chr8 (324-378)||(32919597-32919651)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 20 - 378
Target Start/End: Complemental strand, 1242999 - 1242656
Alignment:
Q  20 atgtggagcctacatatttcatgtgtaccattttaatttcaaccaatnnnnnnngtgtcttagaaaatgtgttctactttactagcattcctcataaaat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||||||||||||||||||||||| ||   ||||||||||    
T  1242999 atgtggagcctacatatttcatgtgtaccattttaatttcaaccaataaaaaa-gtgtgttagaaaatgtgttctactttactaaca---ctcataaaat 1242904  T
Q  120 atttgatgttaatccatcaaaataaaaaccaaaataaatactctacatgaccactttttaatatgaacttattttattgtgactgtaacaaaacaccact 219  Q
    ||||||||||||||||||||||||||            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1242903 atttgatgttaatccatcaaaataaa------------tactccacatgaccactttttaatatgaacttattttattgtgactgtaacaaaacaccact 1242816  T
Q  220 gatcaaaaccaagaaattgaatatttt-ggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgacca 318  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||| |||   | ||||||||||||||||||||||||||||||||||||||||||| |    
T  1242815 gatcaaaaccaagaaattgaatatttttggtggcgtgaggaggtgttggtggatgttcaacaactgggttcgatcataacattttcatccggttcgacta 1242716  T
Q  319 ctacattatatggtggtttgtcgagatggatcgatgatgttgctactgtgaaggtggatt 378  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1242715 ctacattatctggtggtttgtcgagatggatcgatgatgttgctgctgtgaaggtggatt 1242656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 5051441 - 5051306
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||||||||||||  |||||||||   |||||||||||||||| || |||||||||| ||| |||   |||||||||||||||| ||    
T  5051441 ttttggtggtgtgaggaggtgtcggtgggtcttcaacggttgggttcgatcataaccttctcatccggtttgactactctgttatatggtggtttgttga 5051342  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      ||||||| || | ||||| |||  ||||||||||    
T  5051341 tgtggatcgttggttttgctgctgcaaaggtggatt 5051306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 36592957 - 36592822
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||| | | ||||  |||||||||   |||||||||||||||| || ||| |||||| | | |||   |||| ||||||||||||||    
T  36592957 ttttggtggtgtgaggaagggccggtgggtcttcaactgttgggttcgatcataaccttctcacccggtttggctactctgttatctggtggtttgtcga 36592858  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      |||||||||| || ||||  ||||||||||||||    
T  36592857 cgtggatcgatggtggtgctgttgtgaaggtggatt 36592822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 22696599 - 22696464
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    |||||||||||||||||||||  |||  |||||||||   |||||||||||||||| ||||||||||||||||| |||  ||||| ||||||||||||||    
T  22696599 ttttggtggtgtgaggaggtgctggtgggtcttcaacggttgggttcgatcataaccttttcatccggttcgactactctattatctggtggtttgtcga 22696500  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
     ||||||||||| ||||||| |||||||||||||||    
T  22696499 tatggatcgatggtgttgctgctgtgaaggtggatt 22696464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 378
Target Start/End: Original strand, 24045613 - 24045688
Alignment:
Q  303 tcatccggttcgaccactacattatatggtggtttgtcgagatggatcgatgatgttgctactgtgaaggtggatt 378  Q
    |||||||||||||| |||   |||| ||||||||||||   ||||||||||||| |||||  ||||||||||||||    
T  24045613 tcatccggttcgactactctgttatctggtggtttgtccgtatggatcgatgatattgctgttgtgaaggtggatt 24045688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 251 - 378
Target Start/End: Original strand, 40074310 - 40074437
Alignment:
Q  251 gtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcgagatggatc 350  Q
    ||||||||||||||||||  |||| |||  |||||||||||||| ||| || |||||||||||||| ||||  |||| ||||||||||||||| ||||||    
T  40074310 gtgtgaggaggtgtcggtgggtctccaatgactgggttcgatcagaaccttctcatccggttcgactactatgttatctggtggtttgtcgaggtggatc 40074409  T
Q  351 gatgatgttgctactgtgaaggtggatt 378  Q
    |||| ||||||| || ||||||||||||    
T  40074410 gatggtgttgctgctctgaaggtggatt 40074437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 36934296 - 36934161
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||||||||||||  |||||||||   |||||||||||| ||| || ||||| |||||||| |||  ||||| |||||||||| |      
T  36934296 ttttggtggtgtgaggaggtgtcggtgggtcttcaacggttgggttcgatcagaaccttctcatctggttcgactactctattatctggtggtttgccag 36934197  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      ||||| |||||||||||| |||||| ||||||||    
T  36934196 tgtggattgatgatgttgctgctgtgatggtggatt 36934161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 26199837 - 26199702
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||| ||| ||||  ||||||||    ||||||||||||  || || ||||| |||||||| |||  ||||| ||||||||||||||    
T  26199837 ttttggtggtgtgaggatgtgacggtgggtcttcaatggttgggttcgatcagtaccttctcatcaggttcgactactctattatttggtggtttgtcga 26199738  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      || ||||||| ||||| |  ||||||||||||||    
T  26199737 tgtgtatcgatggtgttgttgttgtgaaggtggatt 26199702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 360
Target Start/End: Original strand, 5892950 - 5893067
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    |||| |||||||||||| ||||||||  |||||||||   ||||||| |||| ||| || |||||||||||||  |||   |||| ||||||||||||||    
T  5892950 tttttgtggtgtgaggaagtgtcggtgggtcttcaacggttgggttcaatcagaaccttctcatccggttcgattactctgttatctggtggtttgtcga 5893049  T
Q  343 gatggatcgatgatgttg 360  Q
      ||||| |||| |||||    
T  5893050 tgtggattgatggtgttg 5893067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 378
Target Start/End: Complemental strand, 27109901 - 27109768
Alignment:
Q  245 ttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcgaga 344  Q
    ||||||||||||||||||| ||||  |||||||||   | |||||||||| |||||| |||||||||||||| |||   |||| ||||||||||||||      
T  27109901 ttggtggtgtgaggaggtgccggtgggtcttcaacggtttggttcgatcagaacattctcatccggttcgactactctgttatctggtggtttgtcgatg 27109802  T
Q  345 tggatcgatgatgttgctactgtgaaggtggatt 378  Q
    |||||||||| ||||||| |||||||||||||||    
T  27109801 tggatcgatggtgttgctgctgtgaaggtggatt 27109768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 32946941 - 32947014
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgac 316  Q
    |||||||||||||||||||||||| |  |||||||||   |||||||||||| ||| || ||||||||||||||    
T  32946941 ttttggtggtgtgaggaggtgtcgatgggtcttcaacggttgggttcgatcagaaccttctcatccggttcgac 32947014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 25498893 - 25498758
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    |||| |||||||||||||||||||||  |||||||||   ||| |||||||| ||| ||||||||||||||||| |||  ||||| | ||||||||||||    
T  25498893 tttttgtggtgtgaggaggtgtcggtgggtcttcaacggttggtttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcga 25498794  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      ||||| ||||||||||||  ||||||||||||||    
T  25498793 tgtggattgatgatgttgctgttgtgaaggtggatt 25498758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 378
Target Start/End: Original strand, 51056834 - 51056968
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    |||||||||||||||||||||| |||  |||||||||   || ||||||||||||| || ||| ||| || ||  ||||  |||| ||||||||||||||    
T  51056834 ttttggtggtgtgaggaggtgttggtg-gtcttcaacggttgagttcgatcataaccttctcacccgatttgattactatgttatctggtggtttgtcga 51056932  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      |||||||| |||||| || | |||||||||||||    
T  51056933 tgtggatcgacgatgttactgcagtgaaggtggatt 51056968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 38258839 - 38258744
Alignment:
Q  283 tgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcgagatggatcgatgatgttgctactgtgaaggtggatt 378  Q
    |||||||||||| ||| || |||||||||||||| ||   ||||| |||||||||||| |  ||| |||||| ||||| | || ||||||||||||    
T  38258839 tgggttcgatcagaaccttctcatccggttcgactaccctattatctggtggtttgtctatgtgggtcgatggtgttgatgctatgaaggtggatt 38258744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 49358632 - 49358497
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    |||| ||||||| || ||||||||||  |||||||| |  |||||||||||| ||| || || || | |||||| |||   |||| |||||| |||||||    
T  49358632 tttttgtggtgttagaaggtgtcggtgggtcttcaatagttgggttcgatcagaaccttctcgtctgattcgactactctgttatctggtggattgtcga 49358533  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
     |||||| |||| |||||||  || |||||||||||    
T  49358532 tatggattgatggtgttgctgatgcgaaggtggatt 49358497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 243 - 374
Target Start/End: Original strand, 47442 - 47573
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    |||||||||||||||| |||||||||  |||||||||   ||||||||||||||||  | |||||||||||||| |||   |||| |||||| |||||||    
T  47442 ttttggtggtgtgaggcggtgtcggtgggtcttcaacggttgggttcgatcataactatctcatccggttcgactactctgttatctggtgggttgtcga 47541  T
Q  343 gatggatcgatgatgttgctactgtgaaggtg 374  Q
      |||||||||| ||||||| |||||||||||    
T  47542 tgtggatcgatggtgttgctgctgtgaaggtg 47573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 243 - 374
Target Start/End: Complemental strand, 14792289 - 14792158
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    |||||||||||||||| |||||||||  |||||||||   ||||||||||||||||  | |||||||||||||| |||   |||| |||||| |||||||    
T  14792289 ttttggtggtgtgaggcggtgtcggtgggtcttcaacggttgggttcgatcataactatctcatccggttcgactactctgttatctggtgggttgtcga 14792190  T
Q  343 gatggatcgatgatgttgctactgtgaaggtg 374  Q
      |||||||||| ||||||| |||||||||||    
T  14792189 tgtggatcgatggtgttgctgctgtgaaggtg 14792158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 374
Target Start/End: Complemental strand, 12888298 - 12888167
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||||||||||||  |||||||||   |||||||||||| | | || ||||||| |||||| |||   |||| ||||||||||||||    
T  12888298 ttttggtggtgtgaggaggtgtcggtgggtcttcaacggttgggttcgatcagatccttctcatccgattcgactactctgttatctggtggtttgtcga 12888199  T
Q  343 gatggatcgatgatgttgctactgtgaaggtg 374  Q
      |||||||||| |||||||  ||||||||||    
T  12888198 tgtggatcgatggtgttgctgttgtgaaggtg 12888167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 18357148 - 18357013
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||||||| ||||  |||||||||   |||||||||||| ||  || |||||||||||||| |||   |||||| ||| ||||||||    
T  18357148 ttttggtggtgtgaggaggtgacggtgggtcttcaacggttgggttcgatcagaatcttctcatccggttcgactactctgttatatagtgttttgtcga 18357049  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      |||||||||||||| ||| | |||||||||||||    
T  18357048 tgtggatcgatgatgtggctgccgtgaaggtggatt 18357013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 378
Target Start/End: Original strand, 18431659 - 18431794
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||||||| ||||  |||||||||   |||||||||||| ||  || |||||||||||||| |||   |||||| ||| ||||||||    
T  18431659 ttttggtggtgtgaggaggtgacggtgggtcttcaacggttgggttcgatcagaatcttctcatccggttcgactactctgttatatagtgttttgtcga 18431758  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      |||||||||||||| ||| | |||||||||||||    
T  18431759 tgtggatcgatgatgtggctgccgtgaaggtggatt 18431794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 378
Target Start/End: Original strand, 51407335 - 51407468
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||||||| | ||  |||||||||   |||||||||||| ||| || |||||| ||| ||| |||   |||| || |||||||||||    
T  51407335 ttttggtggtgtgaggaggtgccagtgggtcttcaacggttgggttcgatcagaaccttctcatccagttggactact--gttatctgatggtttgtcga 51407432  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      |||||||||| |||||||  |||||| |||||||    
T  51407433 agtggatcgatggtgttgctgttgtgaaagtggatt 51407468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 378
Target Start/End: Complemental strand, 3915368 - 3915235
Alignment:
Q  245 ttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcgaga 344  Q
    ||||||||||||||||||||| |||  || ||| |   |||||||||| | ||| || ||||| |||||||| | |   |||| ||||||||| ||||      
T  3915368 ttggtggtgtgaggaggtgtcagttgatcctcagcggttgggttcgattagaaccttctcatctggttcgactattctgttatctggtggtttatcgacg 3915269  T
Q  345 tggatcgatgatgttgctactgtgaaggtggatt 378  Q
    |||||||||| ||||||| || ||||||||||||    
T  3915268 tggatcgatggtgttgctgctatgaaggtggatt 3915235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 33758221 - 33758088
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||||||| ||||  |||||||||   |||||||||||| ||| || |||||| ||||||| |||   |||| || |||||||||||    
T  33758221 ttttggtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttctcatccagttcgactact--gttatctgatggtttgtcga 33758124  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      |||||||||| ||||||   ||||| ||||||||    
T  33758123 tgtggatcgatggtgttgccgttgtgatggtggatt 33758088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 9436472 - 9436337
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    |||| |||||||||||||||||||||  |||||||||  ||| |||| |||| ||| || ||||| |||||||  |||   |||| | ||||||||||||    
T  9436472 tttttgtggtgtgaggaggtgtcggtgggtcttcaacggctgagttcaatcaaaaccttctcatctggttcgattactctgttatctagtggtttgtcga 9436373  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      |||||||||| ||||| |  | ||||||||||||    
T  9436372 tgtggatcgatggtgttgatggtttgaaggtggatt 9436337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 378
Target Start/End: Original strand, 38149525 - 38149660
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||| | | ||||| ||||||||     ||||||||||| ||| || ||| ||||||||   |||   |||| ||||||||||||||    
T  38149525 ttttggtggtgtgaggaagggccggttggtcttcaattgtcgggttcgatcagaaccttctcacccggttcgggtactctgttatttggtggtttgtcga 38149624  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      |||||||||| || |||| |||||||||||||||    
T  38149625 cgtggatcgatggtggtgctgctgtgaaggtggatt 38149660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 337
Target Start/End: Complemental strand, 20519070 - 20518976
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggttt 337  Q
    ||||||||||||||||| | |  |||  |||||||||   |||||||||||| |||||| |||||||||||||| |||   |||| |||||||||    
T  20519070 ttttggtggtgtgaggaagggctggtgggtcttcaacggttgggttcgatcagaacattctcatccggttcgactactcttttatctggtggttt 20518976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 378
Target Start/End: Original strand, 32919597 - 32919651
Alignment:
Q  324 ttatatggtggtttgtcgagatggatcgatgatgttgctactgtgaaggtggatt 378  Q
    |||| ||||||||||||||  |||||||||| || |||| |||||||||||||||    
T  32919597 ttatctggtggtttgtcgacgtggatcgatggtggtgctgctgtgaaggtggatt 32919651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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