View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5445_low_13 (Length: 364)
Name: NF5445_low_13
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 354
Target Start/End: Complemental strand, 12550537 - 12550203
Alignment:
| Q |
20 |
cttagacctcagaattagtcactctactttctggtatagatttttatggccaaccttaatattcaaagatttggtaaataaagatttaaaaagaaattct |
119 |
Q |
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| T |
12550537 |
cttagacctcagaattagtcactctactttctggtatagatttttatggccaaccttaatattcaaagatttggtaaataaagatttaaaaagaaattct |
12550438 |
T |
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| Q |
120 |
gagttgcttgttttctcatcaatggtgtcacaacttttgtcattttctttttatttgcatgcatcggatacattgttattaccaaccaacctctgcatca |
219 |
Q |
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| T |
12550437 |
gagttgcttgttttctcatcaatggtgtcacaacttttgtcattttctttttatttgcatgcatcgaatacattgttattaccaaccaacctctgcatca |
12550338 |
T |
|
| Q |
220 |
ttgataattctctcaagcattaagcagtctccacctgctcccaatccatcaatgttgtcttcattgtagggttaaccttaatcacacctttttcattcag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12550337 |
ttgataattctctcaagcattaagcagtctccacctgctcccaatccatcaatgttgtcttcattgtagggttaaccttaatcacacctttttcattcag |
12550238 |
T |
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| Q |
320 |
atttctcagacgccaacacagtgtttcctcctatg |
354 |
Q |
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| T |
12550237 |
atttctcagacgccaacacagtgtttcctcctatg |
12550203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 9462236 - 9462194
Alignment:
| Q |
27 |
ctcagaattagtcactctactttctggtatagatttttatggc |
69 |
Q |
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|||||||||| |||||||||||||||||||||| |||| |||| |
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| T |
9462236 |
ctcagaattattcactctactttctggtatagacttttctggc |
9462194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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