View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5445_low_14 (Length: 317)

Name: NF5445_low_14
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5445_low_14
NF5445_low_14
[»] chr7 (1 HSPs)
chr7 (18-309)||(47122532-47122823)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 47122532 - 47122823
Alignment:
Q  18 taaacaagtgattaaaagtatattatttgtattctgtagtgtccatatacttctctgactcaaatatcatcctccggataaatttatataatcctttaac 117  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  47122532 taaacgagtgactaaaagtatattatttgtattatgtagtgtccatatacttctctgactccaatgtcatcctccggataaatttatataatcctttaac 47122631  T
Q  118 aaattgttttatctcaaataaaattattttcttataaaaacttaaaaatccacatcaaattgaaaattaccttgcaagcctaagtacttataatcaaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47122632 aaattgttttatctcaaataaaattattttcttataaaaacttaaaaatccacatcaaattgaaaattaccttgcaagcctaagtacttataatcaaaat 47122731  T
Q  218 ggtcaagaaatgatattcacacattcatataagagacgcttttgctacaagctacatttgctaatttatctttaaaatacatgtttcatctc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47122732 ggtcaagaaatgatattcacacattcatataagagacgcttttgctacaagctacatttgctaatttatctttaatatacatgtttcatctc 47122823  T

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