View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5445_low_16 (Length: 304)
Name: NF5445_low_16
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 30579807 - 30579538
Alignment:
| Q |
13 |
aatatgcagtctaacagagaagaagaaaatgcaaataaaatcctagtatcctcctttgagatcattaacgacatcgtacggaattggagtaacagtctcc |
112 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30579807 |
aatatgcagtctaacagagaagtagaaagtgcaaataaaatcctagtatcctcctttgagatcattaacgacatcatacggaattggagtaacagtctcc |
30579708 |
T |
|
| Q |
113 |
aatgtagcaccttcgaccatgaaaccaggtttggggccctctggcttgggcttggtgcttatcacctctcccttggccttagcctcagccttcaattgat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30579707 |
aatgtagcaccttcgaccatgaaaccaggtttggggccctctggcttgcgcttggtgcttatcacctctcccttggccttagcctcagccttcaattgat |
30579608 |
T |
|
| Q |
213 |
cattcttgatcttcctcaacctgaactcctcagtgcaccttgatggcataacatgctccactcggacatg |
282 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30579607 |
cattcttgatcttcctcaatctgaactcctcagtgcaccttgatggcataacatgctccactcggacatg |
30579538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 55 - 276
Target Start/End: Complemental strand, 43829509 - 43829288
Alignment:
| Q |
55 |
ctagtatcctcctttgagatcattaacgacatcgtacggaattggagtaacagtctccaatgtagcaccttcgaccatgaaaccaggtttggggccctct |
154 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||| |
|
|
| T |
43829509 |
ctagtatcctcccttaagatcattaaccacatcatatggaattggagtaacagtttccaatgtagctccttcgaccatgaaaccaggtttaggtccctct |
43829410 |
T |
|
| Q |
155 |
ggcttgggcttggtgcttatcacctctcccttggccttagcctcagccttcaattgatcattcttgatcttcctcaacctgaactcctcagtgcaccttg |
254 |
Q |
| |
|
|||||| |||||||||| || || || ||||| ||||||||||||||||| | |||||||||||| ||||||||||| | |||||||||||||||||| | |
|
|
| T |
43829409 |
ggcttgcgcttggtgctaatgacttcaccctttgccttagcctcagccttaagttgatcattcttaatcttcctcaaacggaactcctcagtgcacctag |
43829310 |
T |
|
| Q |
255 |
atggcataacatgctccactcg |
276 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
43829309 |
aaggcataacatgctccactcg |
43829288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University