View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5445_low_21 (Length: 240)
Name: NF5445_low_21
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 39396666 - 39396880
Alignment:
| Q |
1 |
ttctaaatccaagagaggactttgacttcctctaccaattcgtcatctaactttattaaacaccttatcattctgcgcgcgccacaaaacctagatagcc |
100 |
Q |
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| T |
39396666 |
ttctaaatccaagagaggactttgacttcctctaccaattcgtcatctaactttattaaacaccttatcattccgcacgcgccacaaaacctagatagcc |
39396765 |
T |
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| Q |
101 |
gcatgctaaattaacctagaaacccttttgcaacgcctttcctctcgcttccctcatcaaacactcaaaatgagaaaacaaattat-aggaataataaaa |
199 |
Q |
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| T |
39396766 |
gcatgctaaattaacctagaaacccttttgcaacgcctttcctctcgcttccctcatcaaacactcaaaatgagaaaacaaattatcaggaataataaaa |
39396865 |
T |
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| Q |
200 |
ttaacacccaaccaa |
214 |
Q |
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| T |
39396866 |
ttaacacccaaccaa |
39396880 |
T |
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Back To:
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 31024889 - 31024969
Alignment:
| Q |
130 |
gcaacgcctttcctctcgcttccctcatcaaacactcaaaatgagaaaacaaattat-aggaataataaaattaacaccca |
209 |
Q |
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|||||| ||||||||||||||||| |||| || |||||||| ||| ||| ||||| ||||| |||||||||||||||| |
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| T |
31024889 |
gcaacggctttcctctcgcttcccccatccaatactcaaaacgaggaaaacgattatgtggaattataaaattaacaccca |
31024969 |
T |
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