View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5445_low_22 (Length: 238)
Name: NF5445_low_22
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 46895327 - 46895105
Alignment:
| Q |
1 |
ttaattttagatcaccgacgtcttttaattaaaaatatatcacaactattaattttaatgaattgcgatcggattgatataattgattatatgttcttgt |
100 |
Q |
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| T |
46895327 |
ttaattttagatcaccgacgtcttttaattaaaaatatatcacaactattaattttaatgaattgcgatcggattgatataattgattatatgttctcgt |
46895228 |
T |
|
| Q |
101 |
ttctcgtactagcgtacccgtatgtatacgatcttatttatgacattccctttattttgatttttgaactt-gttgtgtgttaatacaaactacagcttg |
199 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46895227 |
ttctcgtactaacgtacccgtatgtatacgatcttatttatgacattccctctattttgatttttgaacttagttgtgtgttaatacaaactacagcttg |
46895128 |
T |
|
| Q |
200 |
ctgattcagaattgtctcaaaac |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
46895127 |
ctgattcagaattgtctcaaaac |
46895105 |
T |
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