View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5445_low_3 (Length: 541)
Name: NF5445_low_3
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 8219500 - 8219217
Alignment:
| Q |
18 |
gcatcaagtggtaattaactgttgttgtgaaagaaagaaactctaccggtatggtctgcagcaaactctccttaatagcagcacagtggatgtttcttga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8219500 |
gcatcaagtggtaattaactgttgttgtgaaagaaagaaactctaccggtatggtctgcagcaaactctccttaatagcagcaaagtggatgtttcttga |
8219401 |
T |
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| Q |
118 |
ggacacggatgcgtcaaccttaaccttgtctggtggttctggtggcggaggtgccatcagccagtgactagatgagaatttcaaaccaaacttcttttct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8219400 |
ggacacggatgcgtcaaccttaaccttgtctggtggttctggtggcggaggtgccatcagccagtgactagatgagaatttcaaaccaaacttcttttct |
8219301 |
T |
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| Q |
218 |
tcagcaaattcagcctctgcatattcatattcatattcatcatcaccgtcccttcccattacatctgtaacaagtatcaccggtgggcct |
307 |
Q |
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| T |
8219300 |
tcagcaaattcagcctctgcatattcatat------tcatcatcaccatcccttcccattacatctgtaacaagtatcaccggtgggcct |
8219217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 306 - 527
Target Start/End: Complemental strand, 8219154 - 8218933
Alignment:
| Q |
306 |
cttattaataagatttgaatctttggtgtcgcactcttctttttgtcacctgatgcctaagtactgttggacgcttcagcaacggtccaaacagtttgca |
405 |
Q |
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| T |
8219154 |
cttattaataagatttgaatctttggtgccgcactcttctttttgtcacctgatgcctaaatactgttggacgcttcagcaacggtccaaacagtttgca |
8219055 |
T |
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| Q |
406 |
atcccctcttcccttgcaaggatcctttcaaaccactaatgtaacgagccactttatgattcttggattcgcccaattcattatgttcagaaaaacacaa |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8219054 |
atcccctcttcccttgcaaggatcctttcaaaccactaatgtaacgagccactttatgattcttggattcgcccaattcattatgttcagaaaaacacaa |
8218955 |
T |
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| Q |
506 |
aaattcagccgtgtactctgtc |
527 |
Q |
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|||||||||||||||||||||| |
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| T |
8218954 |
aaattcagccgtgtactctgtc |
8218933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 371 - 527
Target Start/End: Original strand, 32162952 - 32163108
Alignment:
| Q |
371 |
gttggacgcttcagcaacggtccaaacagtttgcaatcccctcttcccttgcaaggatcctttcaaaccactaatgtaacgagccactttatgattcttg |
470 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32162952 |
gttggacacttcagcaacggtccaaacagtttgcaatcccatcttttcttgcaaggatcctttcaaaccactaatgtaacgagccactttctgattcttg |
32163051 |
T |
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| Q |
471 |
gattcgcccaattcattatgttcagaaaaacacaaaaattcagccgtgtactctgtc |
527 |
Q |
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|||| |||||||| |||| |||||||||||| |||| |||| |||||||||||| |
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| T |
32163052 |
gatttgcccaatttattacgttcagaaaaacggaaaatttcatgtgtgtactctgtc |
32163108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 375 - 523
Target Start/End: Complemental strand, 2156911 - 2156763
Alignment:
| Q |
375 |
gacgcttcagcaacggtccaaacagtttgcaatcccctcttcccttgcaaggatcctttcaaaccactaatgtaacgagccactttatgattcttggatt |
474 |
Q |
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|||||||||||||||||||||| ||| | |||||| ||||| ||||||| || | ||||||||||||||| ||| ||||||| || ||||||| ||| | |
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| T |
2156911 |
gacgcttcagcaacggtccaaatagtcggtaatcccatcttctcttgcaatgaacttttcaaaccactaatataatgagccaccttctgattctcggact |
2156812 |
T |
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| Q |
475 |
cgcccaattcattatgttcagaaaaacacaaaaattcagccgtgtactc |
523 |
Q |
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||| ||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
2156811 |
tgcctaattcattacattcagaaaaacgcaaaaattcagccgtgtactc |
2156763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 371 - 523
Target Start/End: Complemental strand, 30048584 - 30048432
Alignment:
| Q |
371 |
gttggacgcttcagcaacggtccaaacagtttgcaatcccctcttcccttgcaaggatcctttcaaaccactaatgtaacgagccactttatgattcttg |
470 |
Q |
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|||||||||||||||||||||||||||||| || |||||| ||||| ||||||| || | ||||||||||||||| ||||||||||| || ||||||| | |
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| T |
30048584 |
gttggacgcttcagcaacggtccaaacagtctgtaatcccatcttctcttgcaatgaacttttcaaaccactaatataacgagccaccttctgattctcg |
30048485 |
T |
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| Q |
471 |
gattcgcccaattcattatgttcagaaaaacacaaaaattcagccgtgtactc |
523 |
Q |
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|| ||||| ||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
30048484 |
gactcgcctaattcattacgtttagaaaaacacaaaaattcagccgtgtactc |
30048432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 371 - 523
Target Start/End: Complemental strand, 30050871 - 30050719
Alignment:
| Q |
371 |
gttggacgcttcagcaacggtccaaacagtttgcaatcccctcttcccttgcaaggatcctttcaaaccactaatgtaacgagccactttatgattcttg |
470 |
Q |
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|||||||||||||||||||||||||||||| || |||||| ||||| ||||||| || | ||||||||||||||| ||||||||||| || ||||||| | |
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| T |
30050871 |
gttggacgcttcagcaacggtccaaacagtctgtaatcccatcttctcttgcaatgaacttttcaaaccactaatataacgagccaccttctgattctcg |
30050772 |
T |
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| Q |
471 |
gattcgcccaattcattatgttcagaaaaacacaaaaattcagccgtgtactc |
523 |
Q |
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|| ||||| ||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
30050771 |
gactcgcctaattcattacgtttagaaaaacacaaaaattcagccgtgtactc |
30050719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 371 - 523
Target Start/End: Complemental strand, 3536971 - 3536819
Alignment:
| Q |
371 |
gttggacgcttcagcaacggtccaaacagtttgcaatcccctcttcccttgcaaggatcctttcaaaccactaatgtaacgagccactttatgattcttg |
470 |
Q |
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||||||||||||||||||||| |||||||| || ||| || ||||| ||||||| || | ||||||||||||||| ||||||||||| || ||||||| | |
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| T |
3536971 |
gttggacgcttcagcaacggtacaaacagtctgtaattccatcttctcttgcaatgaacttttcaaaccactaatataacgagccaccttctgattctcg |
3536872 |
T |
|
| Q |
471 |
gattcgcccaattcattatgttcagaaaaacacaaaaattcagccgtgtactc |
523 |
Q |
| |
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|| ||||| ||||| ||| |||||||||||| ||||||||||||||||||||| |
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| T |
3536871 |
gactcgcctaattcgttacgttcagaaaaacgcaaaaattcagccgtgtactc |
3536819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 371 - 523
Target Start/End: Original strand, 22925788 - 22925940
Alignment:
| Q |
371 |
gttggacgcttcagcaacggtccaaacagtttgcaatcccctcttcccttgcaaggatcctttcaaaccactaatgtaacgagccactttatgattcttg |
470 |
Q |
| |
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|||||||||||||||||||||||||||||| || |||||| ||||| ||||||| || | |||||||||| |||| |||| |||||| |||||||||| |
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| T |
22925788 |
gttggacgcttcagcaacggtccaaacagtctgtaatcccatcttctcttgcaatgaacttttcaaaccattaatataaccagccaccttatgattctca |
22925887 |
T |
|
| Q |
471 |
gattcgcccaattcattatgttcagaaaaacacaaaaattcagccgtgtactc |
523 |
Q |
| |
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|| ||||| ||||||||| |||||||||||| |||||| |||||||||||||| |
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| T |
22925888 |
gactcgcctaattcattacgttcagaaaaacgcaaaaactcagccgtgtactc |
22925940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 375 - 484
Target Start/End: Original strand, 22571618 - 22571727
Alignment:
| Q |
375 |
gacgcttcagcaacggtccaaacagtttgcaatcccctcttcccttgcaaggatcctttcaaaccactaatgtaacgagccactttatgattcttggatt |
474 |
Q |
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||||||||| ||||| ||||||| || ||||||||| ||||| ||||||| || |||||||| |||||||| |||||||||| ||| ||||||| | | |
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| T |
22571618 |
gacgcttcaacaacgatccaaacggtctgcaatcccatcttctcttgcaacgaacctttcaatccactaatataacgagccattttctgattctcaggct |
22571717 |
T |
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| Q |
475 |
cgcccaattc |
484 |
Q |
| |
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|||||||||| |
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|
| T |
22571718 |
cgcccaattc |
22571727 |
T |
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