View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5445_low_5 (Length: 499)
Name: NF5445_low_5
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 139 - 488
Target Start/End: Original strand, 33556930 - 33557284
Alignment:
| Q |
139 |
tgaaccccttagggaaattttgggtagtaatttgaaaatcac-----atattttttggtattaaccactcaatttcaaaaggaatgcactcctgataatc |
233 |
Q |
| |
|
||||||| ||||||||||||| || |||||||||||||||| || |||| | |||||||||| ||| ||| ||||||| ||||| ||||||| |
|
|
| T |
33556930 |
tgaacccattagggaaattttaggaagtaatttgaaaatcaatttttattttttattgtattaaccattcatttttcaaaggaacacactcttgataatt |
33557029 |
T |
|
| Q |
234 |
tagagtccagttaaggataaataatgtctgacaaaggattgttttagtcggaattgaaatttgagttctcctgaacgattattcctaaactaagggtatg |
333 |
Q |
| |
|
|| || |||| | |||||||| || ||||||| |||||||||||| | |||| |||||||||||||| ||||| ||||||| | ||||||||||||| |
|
|
| T |
33557030 |
taatgttcagtcgggaataaataaagtttgacaaaagattgttttagttgaaattaaaatttgagttctcttgaactattattcgtgaactaagggtatg |
33557129 |
T |
|
| Q |
334 |
aaagtattgcttgatgatcgcaggtggtgttacttccatggatgatttcctcgtagaattcttcccacatgtgtatgcgaggaagcatgaaaaacttcaa |
433 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33557130 |
aaagtattgcttgatgttcacaggtggtgttacttccatggatgatttcctcgtagaattcttcccacatgtgtatgcgaggaagcatgaaaaacttcaa |
33557229 |
T |
|
| Q |
434 |
gaaacagattattgtaaatatgatgatcaaatattgacactatttacttcatctc |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33557230 |
gaaacagattattgtaaatatgatgatcaaatattgacactatttacttcatctc |
33557284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 139 - 488
Target Start/End: Original strand, 33564148 - 33564501
Alignment:
| Q |
139 |
tgaaccccttagggaaattttgggtagtaatttgaaaatcac------atattttttggtattaaccactcaatttcaaaaggaatgcactcctgataat |
232 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||| || |||| | ||||||||||| | ||| ||||||| ||||| ||||||| |
|
|
| T |
33564148 |
tgaaccccttagggaaattttaggaagtaatttgaaaatcaattttttattttttattgtattaaccacac--ttttcaaaggaacacactcttgataat |
33564245 |
T |
|
| Q |
233 |
ctagagtccagttaaggataaataatgtctgacaaaggattgttttagtcggaattgaaatttgagttctcctgaacgattattcctaaactaagggtat |
332 |
Q |
| |
|
|| || |||| | |||||||| || ||||||| |||||||||||| | |||| |||||||||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
33564246 |
ttaatgttcagtcgggaataaataaagtttgacaaaagattgttttagttgaaattaaaatttgagttctcttgaactattattcgtaaactaagggtat |
33564345 |
T |
|
| Q |
333 |
gaaagtattgcttgatgatcgcaggtggtgttacttccatggatgatttcctcgtagaattcttcccacatgtgtatgcgaggaagcatgaaaaacttca |
432 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33564346 |
gaaagtattgcttgatgttcacaggtggtgttacttccatggatgatttcctcgtagaattcttcccacatgtgtatgcgaggaagcatgaaaaacttca |
33564445 |
T |
|
| Q |
433 |
agaaacagattattgtaaatatgatgatcaaatattgacactatttacttcatctc |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33564446 |
agaaacagattattgtaaatatgatgatcaaatattgacactatttacttcatctc |
33564501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 33563982 - 33564111
Alignment:
| Q |
9 |
aaaccaatacaaattttgatttttccatttataagaatagggaatcattttcaaagagaaattgaaaagtttatataaccttcattgatgaata-gcaca |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||| |
|
|
| T |
33563982 |
aaaccaatacaaattttgattttgccatttataggaatagggaatcattttcaaagagaaattgaacagtttatataaccttaattgatgattatgcaca |
33564081 |
T |
|
| Q |
108 |
tattatacatgtgtacgtattttatcccaa |
137 |
Q |
| |
|
||||| || ||||||||||||||||||||| |
|
|
| T |
33564082 |
tattagacctgtgtacgtattttatcccaa |
33564111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 33556764 - 33556893
Alignment:
| Q |
9 |
aaaccaatacaaattttgatttttccatttataagaatagggaatcattttcaaagagaaattgaaaagtttatataaccttcattgatgaata-gcaca |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||| |
|
|
| T |
33556764 |
aaaccaatacaaattttgattttgccatttataggtatagggaatcattttcaaagagaaattgaagagtttatataaccttaattgatgattatgcaca |
33556863 |
T |
|
| Q |
108 |
tattatacatgtgtacgtattttatcccaa |
137 |
Q |
| |
|
||||| || ||||||||||||||||||||| |
|
|
| T |
33556864 |
tattagacctgtgtacgtattttatcccaa |
33556893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 353 - 488
Target Start/End: Original strand, 43379516 - 43379651
Alignment:
| Q |
353 |
gcaggtggtgttacttccatggatgatttcctcgtagaattcttcccacatgtgtatgcgaggaagcatgaaaaacttcaagaaacagattattgtaaat |
452 |
Q |
| |
|
|||||||| |||||||| |||||||||||| | ||||||||||||| ||||||||| |||||| |||| | | | |||||||||||||||||||| |
|
|
| T |
43379516 |
gcaggtggagttacttctatggatgatttcttaaaagaattcttcccaaatgtgtatgagaggaaacatgcacacttggcagaaacagattattgtaaat |
43379615 |
T |
|
| Q |
453 |
atgatgatcaaatattgacactatttacttcatctc |
488 |
Q |
| |
|
||||||||||||| |||||||| || || ||||||| |
|
|
| T |
43379616 |
atgatgatcaaatgttgacacttttcacctcatctc |
43379651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University