View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5445_low_6 (Length: 492)
Name: NF5445_low_6
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 26336083 - 26335788
Alignment:
| Q |
1 |
aatagaattggtgatatctgagagagtatagacannnnnnnggatgacttggttgaaggaatcaatttgggttgtcatatttggtcatgaagaaaatgta |
100 |
Q |
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| T |
26336083 |
aatagaattggtgatatctgagagagtatagacatttttttggatgacttggttgaaggaatcaatttgggttgtcatatttggtcatgaagaaaatgta |
26335984 |
T |
|
| Q |
101 |
tcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgttgttataccataatttgtgaatgattggtgatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26335983 |
tcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgttgttataccataatttgtgaatgattggtgatc |
26335884 |
T |
|
| Q |
201 |
tcaatcccaaatactttgctgcacaacatataagaggaagcaccattaattccaaacctatcacttttcatattaaagctagaaaagtagagacac |
296 |
Q |
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| T |
26335883 |
tcaatcccaaatactttgctgcacaacatataagaggaagcaccattaattccaaacctatcatttttcatattaaagctagaaaagtagagacac |
26335788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 350 - 474
Target Start/End: Complemental strand, 26335734 - 26335610
Alignment:
| Q |
350 |
tgcactttgtagtgttctaattgataatgatgctattagagggaagggtgaattcacataccaaggaagtcagttaaaactctgccgtcggagaatcttc |
449 |
Q |
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| T |
26335734 |
tgcactttgtagtgttccaattgataatgatgctattagagggaagggtgaattcacataccaaggaagtcagttaaaactatgccgtcggagaatcttc |
26335635 |
T |
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| Q |
450 |
cggacagctttcggggaaaggttat |
474 |
Q |
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| T |
26335634 |
cggacggctttcggggaaaggttat |
26335610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 56 - 242
Target Start/End: Complemental strand, 26328317 - 26328131
Alignment:
| Q |
56 |
aaggaatcaatttgggttgtcatatttggtcatgaagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgtt |
155 |
Q |
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||||||| ||||| ||||||| |||||||| || |||| || | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
26328317 |
aaggaattgatttgtgttgtcacatttggtcctgtagaagatatttcaaatacacctgtaccaccataggcaaagttcatcccatacttcaaatcatgct |
26328218 |
T |
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| Q |
156 |
caggcactatgttgttataccataatttgtgaatgattggtgatctcaatcccaaatactttgctgcacaacatataagaggaagca |
242 |
Q |
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| T |
26328217 |
taggcactgtattagtattccataaattgtgagtgattggtgatttcaatcccaaatacttggctgcacaatataaaagaggaagca |
26328131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 26323023 - 26322849
Alignment:
| Q |
44 |
atgacttggttgaaggaatcaatttgggttgtcatatttggtcatgaagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatact |
143 |
Q |
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|||| ||||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26323023 |
atgagttggttgaaggaatcgatttgggctgtcatatttggtcctgaagtaaatgtatcaaatacacctgtgccaccatatgcaaagttcatcccatact |
26322924 |
T |
|
| Q |
144 |
tcaaatcatgttcaggcactatgttgttataccataatttgtgaatgattggtgatctcaatcccaaatactttgctgcac |
224 |
Q |
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| T |
26322923 |
tcaaataatgtttagacacaatgtt------cctgaatttgtgagggattggtgatctcaatctcaaatacttggctgcac |
26322849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 385 - 447
Target Start/End: Complemental strand, 26327747 - 26327685
Alignment:
| Q |
385 |
ttagagggaagggtgaattcacataccaaggaagtcagttaaaactctgccgtcggagaatct |
447 |
Q |
| |
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| T |
26327747 |
ttagagggaagggtgaattcacataccaaggaagtcggttaaaactctaccgtcggagaatct |
26327685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 450
Target Start/End: Complemental strand, 26321184 - 26321142
Alignment:
| Q |
408 |
taccaaggaagtcagttaaaactctgccgtcggagaatcttcc |
450 |
Q |
| |
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|||||| |||||||||||||||||| ||||| ||||||||||| |
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| T |
26321184 |
taccaatgaagtcagttaaaactctaccgtccgagaatcttcc |
26321142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 42224133 - 42224184
Alignment:
| Q |
98 |
gtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaat |
149 |
Q |
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|||||||| ||||| ||||||||| ||||||||||||| ||||| ||||||| |
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| T |
42224133 |
gtatcaaacacaccagtaccaccaaatgcaaagttcattccatatttcaaat |
42224184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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