View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5445_low_7 (Length: 491)

Name: NF5445_low_7
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5445_low_7
NF5445_low_7
[»] chr3 (1 HSPs)
chr3 (17-359)||(52086808-52087150)
[»] chr1 (2 HSPs)
chr1 (360-418)||(52980738-52980796)
chr1 (357-416)||(52980171-52980229)
[»] chr7 (4 HSPs)
chr7 (360-414)||(17502151-17502205)
chr7 (360-414)||(17508296-17508350)
chr7 (360-414)||(17544864-17544918)
chr7 (360-414)||(17551009-17551063)
[»] chr2 (1 HSPs)
chr2 (359-417)||(14519583-14519641)
[»] chr8 (1 HSPs)
chr8 (385-418)||(35411444-35411477)


Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 359
Target Start/End: Original strand, 52086808 - 52087150
Alignment:
Q  17 gaaagaggatgaacaaagtacgagctgctgttggagccatattcttaggctctagtgccaataatactgaaaatggcgacgcatctgttcaacataagag 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52086808 gaaagaggatgaacaaagtacaagctgctgttggagccatattcttaggctctagtgccaataatactggaaatggcgacgcatctgttcaacataagag 52086907  T
Q  117 atgggtggatgatgcttttgctgcattgtaaattagtgctgtatgattttagttgattatccgtttatttgtatttatcaaagtaaccttttcttaataa 216  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52086908 atgggtggatgatgcttttgctgctttgtaaattagtgctgtatgattttagttgattatccgtttatttgtatttatcaaagtaaccttttcttaataa 52087007  T
Q  217 tattgttatgtttgggcatagtgtatatatgtattttactgggaaattggaatagccggtgattttaaagaatttgttttggttgaagttttcttataaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52087008 tattgttatgtttgggcatagtgtatatatgtattttactgggaaattggaatagccggtgattttaaagaatttgttttggttgaagtttccttataaa 52087107  T
Q  317 aatgaaaaatggttacacacttatagctagatatgtaaaacta 359  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  52087108 aatgaaaaatggttacacacttatagctagatatgtaaaacta 52087150  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 52980796 - 52980738
Alignment:
Q  360 gagaaattcttaggtgcaaacgaatataatacgtcatagtttagaaacaaccaatcaaa 418  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  52980796 gagaaattcttaggtgcaaacgaacataacacgtcatagtttagaaacaaccaatcaaa 52980738  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 416
Target Start/End: Original strand, 52980171 - 52980229
Alignment:
Q  357 ctagagaaattcttaggtgcaaacgaatataatacgtcatagtttagaaacaaccaatca 416  Q
    |||||||||||||||| |||||||||| |||| |||| ||| |||||||||||| |||||    
T  52980171 ctagagaaattcttagatgcaaacgaacataacacgttata-tttagaaacaactaatca 52980229  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 17502151 - 17502205
Alignment:
Q  360 gagaaattcttaggtgcaaacgaatataatacgtcatagtttagaaacaaccaat 414  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  17502151 gagaaattcttaggtgcaaacgaacataacacgtcatagtttagaaacaaccaat 17502205  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 414
Target Start/End: Complemental strand, 17508350 - 17508296
Alignment:
Q  360 gagaaattcttaggtgcaaacgaatataatacgtcatagtttagaaacaaccaat 414  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  17508350 gagaaattcttaggtgcaaacgaacataacacgtcatagtttagaaacaaccaat 17508296  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 17544864 - 17544918
Alignment:
Q  360 gagaaattcttaggtgcaaacgaatataatacgtcatagtttagaaacaaccaat 414  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  17544864 gagaaattcttaggtgcaaacgaacataacacgtcatagtttagaaacaaccaat 17544918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 414
Target Start/End: Complemental strand, 17551063 - 17551009
Alignment:
Q  360 gagaaattcttaggtgcaaacgaatataatacgtcatagtttagaaacaaccaat 414  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  17551063 gagaaattcttaggtgcaaacgaacataacacgtcatagtttagaaacaaccaat 17551009  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 14519641 - 14519583
Alignment:
Q  359 agagaaattcttaggtgcaaacgaatataatacgtcatagtttagaaacaaccaatcaa 417  Q
    |||||||||||||| |||||||||| |||| ||||||||||||| ||||||||||||||    
T  14519641 agagaaattcttagatgcaaacgaacataacacgtcatagtttaaaaacaaccaatcaa 14519583  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 35411477 - 35411444
Alignment:
Q  385 ataatacgtcatagtttagaaacaaccaatcaaa 418  Q
    ||||||| ||||||||||||||||||||||||||    
T  35411477 ataatacctcatagtttagaaacaaccaatcaaa 35411444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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