View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5445_low_9 (Length: 449)
Name: NF5445_low_9
Description: NF5445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5445_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 433
Target Start/End: Original strand, 34221790 - 34222212
Alignment:
| Q |
13 |
aatattggagattcaattcaaccaagtacacatagttttctatgtccaaaatgaggacacgaattctagcttttatccatgcaatcatgtccccttcgaa |
112 |
Q |
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| T |
34221790 |
aatattggagattcaattcaaccaagtacacatagttttctatgtccaaaatgaggacacgaattctagcttttatccatgcaatcatgtccccttccca |
34221889 |
T |
|
| Q |
113 |
acctttgatcctcttaacttttcctatatgttggtcccttgagaccccactcccatgatctgcaacaacttgtcccattaccaaacaaattagtcactaa |
212 |
Q |
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| T |
34221890 |
acctttgatcctcttaacttttcctatatgttggtcccttaagaccccactcccatgatcagcaacaacttgtcccattaacaaacaaattagtcactaa |
34221989 |
T |
|
| Q |
213 |
tcataaatagtttggatgcatttaacttatgtaagaaactgttcataggaatcgttttgatgcaacatggaaaattcaatacactcttctcttacaaaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34221990 |
tcataaatagtttggatgcatttaacttatgtaagaaactgttcataggaattattttgatgcaacatggaaaattcaatacactcttctcttacaaaca |
34222089 |
T |
|
| Q |
313 |
acaatattatctattgtaatattagacccaataaacaacacaagttctaagcatcaagatgcttaaatggatcatg--nnnnnnnncctttctataatga |
410 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34222090 |
acaatattatctattgtaatagtagacccaataaacaacacaagttctaagcatcaagatgcttaaatggatcatgttttttttttcctttctataatga |
34222189 |
T |
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| Q |
411 |
taacaataattacttgagaaaaa |
433 |
Q |
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| T |
34222190 |
taacaataattacttgagaaaaa |
34222212 |
T |
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