View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_high_1 (Length: 875)
Name: NF5446_high_1
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 432 - 862
Target Start/End: Original strand, 3731194 - 3731621
Alignment:
| Q |
432 |
atccgtacttgaatttttgctactgtgcgttcacttaggaatgccttcactgctttccacaacatcttaaagccagaaccagcattaataataaagagtt |
531 |
Q |
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| T |
3731194 |
atccgtacttgaatttttgctactgtgcgttcacttaggaatgccttcactgctttccacaacatcttaaagccagaaccagcattaataataaagagtt |
3731293 |
T |
|
| Q |
532 |
tatttagagtctgcnnnnnnnnnnnntagatgaactttaatcaacttcaatagggaaactactacaataaaaatttaagaattcgtctttaactttttat |
631 |
Q |
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| T |
3731294 |
tatttagagtctgcaaaaaaaaaaa-tagatgaactttaatcaacttcaatagggaaactactacaataaaaatttaagaattcgtctttaactttttat |
3731392 |
T |
|
| Q |
632 |
gttattattgttgtaaactttgaaaactatataaccattgtcatattatcaaataatctaacttaatcacacattaaaatagcagtcatgtcacatatat |
731 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
3731393 |
gttattattgttgtaaactttgaaaactatataaccattgtcatattatcaaataatctaacttaatcacacatt--aatagcattcatgtcacatatat |
3731490 |
T |
|
| Q |
732 |
ccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgcaggctt |
831 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731491 |
ccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgcaggctt |
3731590 |
T |
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| Q |
832 |
tgagaaattagacattccctagaagaataat |
862 |
Q |
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| T |
3731591 |
tgagaaattagacattccctagaagaataat |
3731621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 3730821 - 3731196
Alignment:
| Q |
18 |
ccttcatcactcatcaagcaacctccatattcagaacatgtgcaattaccacccaaaaatgttggcaagttactgaaaaattgaacaattagatctaaga |
117 |
Q |
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| T |
3730821 |
ccttgatcactcatcaagcaacctccatattcagaacatgtgcaattaccacccaaaaatgttggcaagttactgaaaaattgaacaattagatctaaga |
3730920 |
T |
|
| Q |
118 |
gtttcattaaacgcagaacatcacaaatagacctaattgtaagtagtaacatattcatcnnnnnnnggcttcaacttcctaagttgcctgttgctacaga |
217 |
Q |
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| T |
3730921 |
gtttcattaaacgcagaacatcacaaatagacctaattgtaagtagtaacatattcatcaaaaaaaggcttcaacttcctaagttgcctgttgctacaga |
3731020 |
T |
|
| Q |
218 |
aaaaatcatggcttaactatacaaaagtcgttttacctcggatcaatagcgtctagcaacacactgagataattagaacccaaaacctgaaaaaggaatg |
317 |
Q |
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| T |
3731021 |
aaaaatcatggcttaactatacaaaagtcgttttacctcggatcaatagcctctagcaacacactgagataattagaacccaaaacctgaaaaaggaatg |
3731120 |
T |
|
| Q |
318 |
ttggagatttaacataaacacaaaactgtaaaatagaggttgatacaacaaaatatagtaatagttgtataaaatc |
393 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731121 |
ttggagatttaacataaacacaaaactgtaagatagaggttgatacaacaaaatatagtaatagttgtataaaatc |
3731196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 6e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 727 - 862
Target Start/End: Original strand, 11683800 - 11683935
Alignment:
| Q |
727 |
tatatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgca |
826 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11683800 |
tataaccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataattgctatcaatcttctgaatttccatgaagatttaccttgca |
11683899 |
T |
|
| Q |
827 |
ggctttgagaaattagacattccctagaagaataat |
862 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
11683900 |
ggctctgagaaattagacattccctagaagaataat |
11683935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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