View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5446_high_10 (Length: 373)
Name: NF5446_high_10
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 29333202 - 29332863
Alignment:
| Q |
19 |
ttttccagtgaagtgcaatcggaaaataagaaagggcttttgttgttaacggtaataccggtggatgttgcgaatgagagagcattttggttgaatcaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333202 |
ttttccagtgaagtgcaatcggaaaataagaaagggcttttgttgttaacggtaataccggtggatgttgcgaatgagagagcattttggttgaatcaag |
29333103 |
T |
|
| Q |
119 |
ggaattttgatcttgtgtttgggagtatcttggaatggacttatcgggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333102 |
ggaattttgatcttgtgtttgggagtatcttggaatggacttatcgggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttatt |
29333003 |
T |
|
| Q |
219 |
gtcgcaggagcttaagagaacagatgtatgcgattttctgttgccgaatttgttgagtattatcgatgaacatggggaagaagaggttttggtggatagg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333002 |
gtcgcaggagcttaagagaacagatgtatgcgattttctgttgccgaatttgttgagtattatcgatgaacatggggaagaagaggttttggtggatagg |
29332903 |
T |
|
| Q |
319 |
gttaagcgtttgggcgatttagttacgttggatgatgatg |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29332902 |
gttaagcgtttgggcgatttagttacgttggatgatgatg |
29332863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 165 - 303
Target Start/End: Complemental strand, 29321862 - 29321724
Alignment:
| Q |
165 |
ggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccg |
264 |
Q |
| |
|
|||| |||||||||| | |||||||| || ||||||| |||||||||||||||||||| |||| ||| |||||||||| |||| |||| |||| |||||| |
|
|
| T |
29321862 |
ggatcaggaattgaaagcattggcattcactgcatcactttcgttgatgttattgtcgaaggatcttcagagaacagacgtatacgatattctcttgccg |
29321763 |
T |
|
| Q |
265 |
aatttgttgagtattatcgatgaacatggggaagaagag |
303 |
Q |
| |
|
| |||||||| ||||||| || ||||||| ||||||||| |
|
|
| T |
29321762 |
attttgttgaatattatcaatcaacatggagaagaagag |
29321724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 165 - 355
Target Start/End: Complemental strand, 29304676 - 29304486
Alignment:
| Q |
165 |
ggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccg |
264 |
Q |
| |
|
|||| |||||||||||| | |||||||| || |||||||||| ||||| |||||||| | || || || || || |||| | ||| ||| |||| | |
|
|
| T |
29304676 |
ggatcaggaattgaaggcactggcatacgattcatcaatttcattgatattattgtcaaatgattttctgaaaaatgaagtatccaattctctcttgcgg |
29304577 |
T |
|
| Q |
265 |
aatttgttgagtattatcgatgaacatggggaagaagaggttttggtggatagggttaagcgtttgggcgatttagttacgttggatgatg |
355 |
Q |
| |
|
||||| |||| ||| |||||| |||| || |||||||||||| ||||| ||||| |||| |||||| | || ||||||| |||||||||| |
|
|
| T |
29304576 |
aatttattgaatatcatcgatcaacacggagaagaagaggttctggtgaataggattaatcgtttgtgggaattagttaaattggatgatg |
29304486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University