View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_high_12 (Length: 356)
Name: NF5446_high_12
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 32659066 - 32658748
Alignment:
| Q |
20 |
gaacgcagtttcatatagttacaagaagattagaccattgccactaaatactaaaggccattgccactaaagtgacacatacacgacaatggtggtagta |
119 |
Q |
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| T |
32659066 |
gaacgcagtttcatatagttacaagaagattagaccattgccactaaatactaaaggccattgccactaaagtgacacatacacgacaatggtggtagta |
32658967 |
T |
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| Q |
120 |
cttgtatgacatgatttattttgatactttaaatttgaatgtaatttatagtaaaataaaatatatttggacatatcaatttccattttaaattcattta |
219 |
Q |
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| T |
32658966 |
cttgtataacatgatttattttgatactttaaatttgaatgtaatttatagtaaaataaactatatttggacatatcaatttccattttaaattcattta |
32658867 |
T |
|
| Q |
220 |
agctatataatgtgaagtctcaaccgaaatttatatacttcataaatcactagattgagagtctaatagaagaattaaactttcttaaattgttatatga |
319 |
Q |
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| T |
32658866 |
agctatataatgtgaagtctcaaccgaaatttatatacttcataaatcactagattgagagtctaatagaagaattaaactttcttaaattgttatatga |
32658767 |
T |
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| Q |
320 |
tgaattaaaatgaacttgg |
338 |
Q |
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| T |
32658766 |
tgaattaaaatgaacttgg |
32658748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 128 - 298
Target Start/End: Complemental strand, 32651437 - 32651269
Alignment:
| Q |
128 |
acatgatttattttgatactttaaatttgaatgtaatttatagtaaaataaaatatatttggacatatcaatttccattttaaattcatttaagctatat |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
32651437 |
acatgatttattttgatactttaaatttgaatgtaatttatagtaaaataacatgattttgaacatatcaatttccattttcaattcatttaagctatat |
32651338 |
T |
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| Q |
228 |
aatgtgaagtctcaaccgaaatttatatacttcataaatcactagattgagagtctaatagaagaattaaa |
298 |
Q |
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| T |
32651337 |
aatgtgaagtctcaaccgaaatttatatacttcaaaaattatttgatt--gagtctaataaaagagttaaa |
32651269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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