View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_high_14 (Length: 339)
Name: NF5446_high_14
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 36904491 - 36904801
Alignment:
| Q |
19 |
ctactaacaccacccctgcttccactttaccccctgaatctaccatgatgaatccaagctccccaacctcagccagcaacttgggtccatctgaaggtcg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36904491 |
ctactaacaccacccctgcttccactttaccccctgaatctaccatgatgaatccaagctccccaacctcagccagcaacttgggtccatctgaaggccg |
36904590 |
T |
|
| Q |
119 |
tgtgtcaaagcccataaggagaagatcacgagcttcgcgtcgaacaccgacgactttacttaacacggacactaccaatttccgtgccatggtacaacaa |
218 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36904591 |
tgtgtcaaagcccatacggagaagatcacgagcttcgcgtcgaacgccgacgactttacttaacacggacactaccaatttccgtgccatggtacaacaa |
36904690 |
T |
|
| Q |
219 |
ttcaccggaggtcctattgcaccttttgcagcagcagccacatcatcatcaccacctaatttctcaaccctagcaggcctagggcttggcccacgggctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36904691 |
ttcaccggaggtcctattgcaccttttgcagcagcagccacatcatcatcaccacctaatttctcaaccctagcaggcctagggcttggcccacgggctt |
36904790 |
T |
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| Q |
319 |
cccatcctatg |
329 |
Q |
| |
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||||||||||| |
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| T |
36904791 |
cccatcctatg |
36904801 |
T |
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