View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_high_18 (Length: 330)
Name: NF5446_high_18
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 38025557 - 38025677
Alignment:
| Q |
13 |
aatattcttatattatttcttggtggttgcttaatagacccctcaatccgcttttgattgagtcgtaacgttcaatcagcttttttgtgtgtaaattctg |
112 |
Q |
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| T |
38025557 |
aatattcttatattatttcttggtggttgcttaatagacccctcaatccgcttttgattgagtcgtaacgttcaatcagcttttttgtgtgtaaattctg |
38025656 |
T |
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| Q |
113 |
atcgggtcgtaacaccttaaa |
133 |
Q |
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| T |
38025657 |
atcggatcgtaacaccttaaa |
38025677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 128 - 312
Target Start/End: Original strand, 38025750 - 38025932
Alignment:
| Q |
128 |
cttaaagctgacggtaggtttagggatggtaaaattttaagagggcttcaatgctgcctcgttaggaaaacgagtgtagatgnnnnnnnnnnnnnnnaag |
227 |
Q |
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| T |
38025750 |
cttaaagctgacggtaggtttagggatggtaaaattttaagagggtttcaatgctgcctcgttaggaaaacgagtgtagatg---ttttttttttttaag |
38025846 |
T |
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| Q |
228 |
gnnnnnnnntgagtgtaattttaagaaacgnnnnnnngtaa-tttgttgtttaaattgcttgtatttaaatacgaagaaagtcatg |
312 |
Q |
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| T |
38025847 |
gaaaaaaaatgagtgtaattttaagaaacgaaaaaaagtaattttgttgtttaaattgcttgtatttaaatacgaagaaagtcatg |
38025932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 26841130 - 26841090
Alignment:
| Q |
85 |
caatcagcttttttgtgtgtaaattctgatcgggtcgtaac |
125 |
Q |
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| T |
26841130 |
caatcaacttttttgtgtgtaaattctgatcgggtggtaac |
26841090 |
T |
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