View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_high_2 (Length: 512)
Name: NF5446_high_2
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Original strand, 42899017 - 42899509
Alignment:
| Q |
1 |
aacatgaacaatctccaaacacaagatatccaaggcttcacattgaagaaagagcatcaaagtttcaacatgttaaggccagaacaagaagtacaaatac |
100 |
Q |
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| T |
42899017 |
aacatgaacaatctccaaactcaagatatccaaggcttcacattgaagaaagagcatcaaagtttcaacatgttaaggccagaacaagaagtacaaatac |
42899116 |
T |
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| Q |
101 |
cctcttggctttgtcaatcatccattgatctctcttcaaactattcaagtttggatcaagatctacacctttatgaaaaccctaaccctagaaatggtcc |
200 |
Q |
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| T |
42899117 |
cctcttggctttgtcaatcatccattgatctctcttcaaactattcaagtttggatcaagatctacacctttatgaaaaccctaaccctagaaatggtcc |
42899216 |
T |
|
| Q |
201 |
tactcctacacttccatcctaccaaccatcatctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaaccagc |
300 |
Q |
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| T |
42899217 |
tacttctacacttccatcctaccaaccatcatctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaaccagc |
42899316 |
T |
|
| Q |
301 |
tcatgctcatcacagtccatgatgagtgggacccaccaacagggtcacgtgtctattgttgactctgccaccaacaacatgataaactcaaatggtaatt |
400 |
Q |
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| T |
42899317 |
tcatgctcatcacagtccatgatgagtgggacccaccaacagggtcacgtgtctattgttgactctgccaccaacaacatgataaactcaaatggtaatt |
42899416 |
T |
|
| Q |
401 |
ttagtttgaatttgtcctcatgtgaagaccaaatgataaacaactctttctcttcttctggatttcatggaacttcttttgaggatacttttg |
493 |
Q |
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| T |
42899417 |
ttagtttgaatttgtcctcatgtgaagaccaaatgataaacaactctttctcttcttctggatttcatggaacttcttttgaggatacttttg |
42899509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 5787666 - 5787617
Alignment:
| Q |
247 |
cacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaac |
296 |
Q |
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|||||||||||||| |||||||| |||||||||||||| ||||||||||| |
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| T |
5787666 |
cacatgtcagctactgcattgttgcagaaagcagctcaaatgggtgcaac |
5787617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 36990837 - 36990900
Alignment:
| Q |
233 |
ctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaac |
296 |
Q |
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| T |
36990837 |
ctgcaacttcacctcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaac |
36990900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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