View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_high_23 (Length: 281)
Name: NF5446_high_23
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 97 - 263
Target Start/End: Complemental strand, 19734962 - 19734796
Alignment:
| Q |
97 |
taaaggagtaatatcttagtcattcatggtgcaatacttttgcaataaaactcagttgacaatatccctcaattactctaaaattattttatcattatgt |
196 |
Q |
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| T |
19734962 |
taaaggagtaatatcttagtcattcatggtgcaatacttttgcaataaaactcagttgataatatccctcaattactctaaaattattttatcattatgt |
19734863 |
T |
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| Q |
197 |
gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtactgtgcatctg |
263 |
Q |
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| T |
19734862 |
gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtactgtgcatctg |
19734796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 97 - 263
Target Start/End: Complemental strand, 19730578 - 19730412
Alignment:
| Q |
97 |
taaaggagtaatatcttagtcattcatggtgcaatacttttgcaataaaactcagttgacaatatccctcaattactctaaaattattttatcattatgt |
196 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19730578 |
taaaggagtaatatcttagtcattcatgctgcaatacttttgcaataaaactcagttgacaatatcccttaattactctaaaattattttatcattatgt |
19730479 |
T |
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| Q |
197 |
gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtactgtgcatctg |
263 |
Q |
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| T |
19730478 |
gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtattgtgcatctg |
19730412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 5845387 - 5845343
Alignment:
| Q |
97 |
taaaggagtaatatcttagtcattcatggtgcaatacttttgcaa |
141 |
Q |
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| T |
5845387 |
taaaggagtaatatttttgtcattaatggtgcaatatttttgcaa |
5845343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 253
Target Start/End: Complemental strand, 19855059 - 19854962
Alignment:
| Q |
158 |
atatccctcaattactctaaaattattttatcattatgtgt--catttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtac |
253 |
Q |
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||||| |||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||| |||| ||||||||||| | ||||||| |
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| T |
19855059 |
atatcactcaattactctaaaattatcctatcattatgtgtatcatttgtttgtaataacttgtaattagtttacatgctcctagcttttccttgtac |
19854962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 40915412 - 40915369
Alignment:
| Q |
97 |
taaaggagtaatatcttagtcattcatggtgcaatacttttgca |
140 |
Q |
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| T |
40915412 |
taaaggagtaatatcttagtcattgatggtgcaatacttttgca |
40915369 |
T |
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