View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5446_high_25 (Length: 267)
Name: NF5446_high_25
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_high_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 65 - 249
Target Start/End: Complemental strand, 32240187 - 32240003
Alignment:
| Q |
65 |
ggaacaggcgtagcacccagctacatatcctcagaaaccagaaaacccacagagagtagcagcagaagcgaagaagggcggatcccgctggtagtgtatg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32240187 |
ggaacaggcgtagcacccagctacatatcctcagaaaccagaaaacccacagagagcagcagcagaagcgaagaagggcggatcccgctggtagtgtatg |
32240088 |
T |
|
| Q |
165 |
gaacagttggatttgaagaggctctattgtaagattaatagatcacattagaatacaaaaagcctgcatctctaacccattactt |
249 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32240087 |
gaacagttggatttgaagaggttctattgtaagattaatagatcacattagaatacaaaaagcctgcatctctaacccattactt |
32240003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 32240241 - 32240208
Alignment:
| Q |
11 |
cagagagcaccgcagaagcctataaacctcacac |
44 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
32240241 |
cagagagcaccgcagaagcctataaaccacacac |
32240208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University