View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_high_27 (Length: 264)
Name: NF5446_high_27
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_high_27 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 4 - 264
Target Start/End: Original strand, 13202424 - 13202684
Alignment:
| Q |
4 |
tccaagaatatgatctcttccaatttgcttcaccaatttgacaaactcaacccttctttccctactcaaaggtacatatggtagcctaaaaacaggcttg |
103 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13202424 |
tccaacaaaatgatctcttccaatttgcttcaccaatttgacaaactcaacccttctttccctactcaaaggtacatatggtagcctaaaaacaggcttg |
13202523 |
T |
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| Q |
104 |
ataacaccaagttgagcaagagcagtgttcaaaccaattgggataacctctaaagaaagccaatcaaacaaaggaataagctttgaattcaatgaaggat |
203 |
Q |
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| T |
13202524 |
ataacaccaagttgagcaagagcagtgttcaaaccaattgggataacctctaaagaaagccaatcaaacaaaggaataagctttgaattcaatgaaggat |
13202623 |
T |
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| Q |
204 |
tcattccttcattcatgagtttcaccattaaactaggaatcaagttacttgcaagagacac |
264 |
Q |
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| T |
13202624 |
tcattccttcattcatgagtttcaccattaaactaggaatcaagttacttgcaagagacac |
13202684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 13180033 - 13180165
Alignment:
| Q |
73 |
aggtacatatggtagcctaaaaacaggcttgataacaccaagttgagcaagagcagtgttcaaaccaattgggataacctctaaagaaagccaatcaaac |
172 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||| | |||||||||||||| |
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| T |
13180033 |
aggtacatatggcagcctaaaaacaggcttgataaccccaagttgagcaagagcagtgttcaaagcaattgggcttggctctataaaaagccaatcaaac |
13180132 |
T |
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| Q |
173 |
aaaggaataagctttgaattcaatgaaggattc |
205 |
Q |
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| T |
13180133 |
aaagtcataagctttgaattcaatgtaggattc |
13180165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 13188295 - 13188427
Alignment:
| Q |
73 |
aggtacatatggtagcctaaaaacaggcttgataacaccaagttgagcaagagcagtgttcaaaccaattgggataacctctaaagaaagccaatcaaac |
172 |
Q |
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|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||| | |||||||||||||| |
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| T |
13188295 |
aggtacatatggaagcctgaaaacaggcttgataaccccaagttgagcaagagcagtgttcaaagcaattgggcttggctctataaaaagccaatcaaac |
13188394 |
T |
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| Q |
173 |
aaaggaataagctttgaattcaatgaaggattc |
205 |
Q |
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| T |
13188395 |
aaagtcataagctttgaattcaatgtaggattc |
13188427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 13191423 - 13191487
Alignment:
| Q |
77 |
acatatggtagcctaaaaacaggcttgataacaccaagttgagcaagagcagtgttcaaaccaat |
141 |
Q |
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|||| ||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||| |||| |
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| T |
13191423 |
acatgtggtagcctgaaaattggcttaataaccccaagttgagcaagagcagtgttcaaagcaat |
13191487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 28177377 - 28177309
Alignment:
| Q |
73 |
aggtacatatggtagcctaaaaacaggcttgataacaccaagttgagcaagagcagtgttcaaaccaat |
141 |
Q |
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||||||| |||| ||||| ||||| ||| ||| ||| ||||||||||||||||| |||||||||||||| |
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| T |
28177377 |
aggtacaaatggcagcctgaaaactggcctgacaactccaagttgagcaagagccgtgttcaaaccaat |
28177309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 39752826 - 39752758
Alignment:
| Q |
73 |
aggtacatatggtagcctaaaaacaggcttgataacaccaagttgagcaagagcagtgttcaaaccaat |
141 |
Q |
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||||||| |||| ||||| ||||| ||| ||| ||| ||||| ||||||||||| |||||||||||||| |
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| T |
39752826 |
aggtacaaatggcagcctgaaaactggcctgacaactccaagctgagcaagagccgtgttcaaaccaat |
39752758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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