View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_high_36 (Length: 208)
Name: NF5446_high_36
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_high_36 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 29606882 - 29607101
Alignment:
| Q |
1 |
agcaccagcacccgcaccagacaaagaaacaccggcaccagcacctacacacaaaaagaagaaagcaccaaaatcatcacctgttccttccccagcaatt |
100 |
Q |
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| T |
29606882 |
agcaccagcacccgcaccagacaaagaaacaccggcaccagcacctacacacaaaaagaagaaagcaccaaaatcatcacctgttccttccccagcaatt |
29606981 |
T |
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| Q |
101 |
ctcccaccatcacctgcaccaacacctgcaatagaca------------caccagcaccatcgcctgaagatgctgcgccagaaccaccgccaccccaca |
188 |
Q |
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| T |
29606982 |
ctcccaccatcacctgcaccaacacctgcaatagacacaccatcatcagcaccagcaccatcgcctgaagatgatgcgccagaaccaccgccaccccaca |
29607081 |
T |
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| Q |
189 |
agcacaagagaagaaaacac |
208 |
Q |
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|||||||||||||||||||| |
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| T |
29607082 |
agcacaagagaagaaaacac |
29607101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 29606828 - 29606881
Alignment:
| Q |
7 |
agcacccgcaccagacaaagaaacaccggcaccagcacctacacacaaaaagaa |
60 |
Q |
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|||||| ||||| | ||||||| |||| |||||||||||||||||||||||||| |
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| T |
29606828 |
agcaccagcaccggccaaagaagcaccagcaccagcacctacacacaaaaagaa |
29606881 |
T |
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