View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_high_6 (Length: 439)
Name: NF5446_high_6
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 317
Target Start/End: Original strand, 23142589 - 23142896
Alignment:
| Q |
10 |
gcacagacttttatggaattgttgttggtctatcgtaaacatgggaggttacaacttgcaagggtagtctcattgtgcttaagatggatttaaaatgatg |
109 |
Q |
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| T |
23142589 |
gcacagacttttatgaaatcattgttggtcaatcgtaaacatgggaggttacaacttgcaagggtagtctcattgtgcttaagatggatttaaaatgatg |
23142688 |
T |
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| Q |
110 |
acatcttagaagggtgccaatctacaaaatgattttgaacaaatgtttatgatatccacattttctttatggacaaaggttcttttgcacctataaaatt |
209 |
Q |
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| T |
23142689 |
acatcttagaagggtgccaatcttcaaaatgattttgaacaaatgtttatgacatccacattttctttatggacaaaggttcttttgcacctataaaatt |
23142788 |
T |
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| Q |
210 |
atctccaaaggaaacattttaatgttcatgtccccttctccatcaagatgcttagatggatcacatgtagcctcttcttgcttgcatacttgtccactat |
309 |
Q |
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| T |
23142789 |
atctccaaaggaaatattttaatgttcatgtccccttctccatcaagatgcttagaaggatcacatgtagcctcttcttgcttgcatacttgtccactat |
23142888 |
T |
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| Q |
310 |
aattcatt |
317 |
Q |
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| T |
23142889 |
aattcatt |
23142896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 381 - 421
Target Start/End: Original strand, 23142960 - 23143000
Alignment:
| Q |
381 |
ggagaagatcgaaattattatttattaaagtgacacttatg |
421 |
Q |
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| T |
23142960 |
ggagaagatcgaaattattatttattaaagtgtcgcttatg |
23143000 |
T |
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