View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_high_9 (Length: 391)
Name: NF5446_high_9
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 374
Target Start/End: Complemental strand, 41623311 - 41622953
Alignment:
| Q |
9 |
ccaagaatattcatctgattaggaaaactatgatgaatcaactaaaccatagacagaacaaaaacagaagtaggaaaagatagcatagttgattgatata |
108 |
Q |
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| T |
41623311 |
ccaaaaatattcatctgattaggaaaactttgatgaatcaactaaaccatagacagaacaaaaacagaagtaggaaaagatagcatagttgattgatata |
41623212 |
T |
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| Q |
109 |
tttgataacagcaagaaacaagattcaaaaaactaaatagacgactctatttt-ggatgataataatgatgatgatatctagaatagaacaaagaagaat |
207 |
Q |
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| T |
41623211 |
tttgataacagcaagaaacaagattcacaaaactaaatagacgactctatttttggatgataataatgatgatgatat----aatagaacaaagaagaat |
41623116 |
T |
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| Q |
208 |
gaattagagtaaaaatattgtagacactactgaatataacttcggacaaacctaggaaaagttgctatccaacaactgtgaagaggaactaacattattt |
307 |
Q |
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| T |
41623115 |
gaattagagtaaaaatattgtagacactagtgaatataacttcggacaaacctaggaaaagttgctatccaacaactctgaagaggaaa----attgttt |
41623020 |
T |
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| Q |
308 |
gatgacttggagtcacaactttgttatatagaattagaatatagaattcataaatgattctttcttt |
374 |
Q |
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| T |
41623019 |
gatgacttggagtcacaactttgttatatagaattagaatatagaattcataaatgattctttcttt |
41622953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 342
Target Start/End: Complemental strand, 41626272 - 41625940
Alignment:
| Q |
9 |
ccaagaatattcatctgattaggaaaactatgatgaatcaactaaaccatagacagaacaaaaacagaagtaggaaaagatagcatagttgattgatata |
108 |
Q |
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| T |
41626272 |
ccaagaatattcatctgattaggaaaactttgatgaatcaactaaaacatagacagaacaaaaacagaagcaggaaaagatagcatagttgattgatata |
41626173 |
T |
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| Q |
109 |
tttgataacagcaagaaac-aagattcaaaaaactaaatagacgactctattttggatgataataatgatgatgatatctagaatagaacaaagaagaat |
207 |
Q |
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| T |
41626172 |
tttgataacagcaagaaaataagattcataaaactacatagccgactctattttggatgataataatgattttgatatttagaatagaacaaagaagaat |
41626073 |
T |
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| Q |
208 |
gaattagagtaaaaatattgtagacactactgaatataacttcggacaaacctaggaaaagttgctatccaacaactgtgaagaggaactaacattattt |
307 |
Q |
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| T |
41626072 |
gaattagagtaaaaatattgtagacactagtgaatataaccgtggacaaacctaggaaaagttgctatctaacaac--tgaagaggagctaacattgttt |
41625975 |
T |
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| Q |
308 |
gatgacttggagtcacaactttgttatatagaatt |
342 |
Q |
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| T |
41625974 |
gatgaattggagtcacagctttgttatatagaatt |
41625940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 41619855 - 41619793
Alignment:
| Q |
258 |
cctaggaaaagttgctatccaacaactgtgaagaggaactaacattatttgatgacttggagtca |
322 |
Q |
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| T |
41619855 |
cctaggaaaagttgatatctaacaa--gtgaagaggaactagcattgttggatgatttggagtca |
41619793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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