View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_low_11 (Length: 356)
Name: NF5446_low_11
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 2692240 - 2691896
Alignment:
| Q |
19 |
tgtgaaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatggagatttggttgatgttcaac |
118 |
Q |
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| T |
2692240 |
tgtgaaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatggagatttggttgatgttcaac |
2692141 |
T |
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| Q |
119 |
agtttgaacgtggcgatggaaatacattgcatattcgtcttgatcattctgatttaggtaaggtgcttcaaagggttccttaagctttgtttccatgtat |
218 |
Q |
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| T |
2692140 |
agtttgaacgtggtgatggaaatacattgcatattcgtcttgctcattctgatttaggtaaggtgcttcaaagggttccttaagctttgtttccatgtat |
2692041 |
T |
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| Q |
219 |
atggaacttcaattttaattatcatttatcactagcactattttttcatgtatgg---------------ttcaattgataatatatannnnnnnncatt |
303 |
Q |
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| T |
2692040 |
atggaacttcaattttaattatcatttatcactagcactattttttcatgtatggttcttgagtaactctttcaattgataatatattttttttttcatt |
2691941 |
T |
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| Q |
304 |
gtttctgaagatgatgagtctcagatttttacaagcttctgtgct |
348 |
Q |
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| T |
2691940 |
gtttctgaagatgatgagtctcagatttttacaagcttctgtgct |
2691896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 2699935 - 2699779
Alignment:
| Q |
23 |
aaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatggagatttggttgatgttcaacagtt |
122 |
Q |
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| T |
2699935 |
aaggtaattgtttacagaatggttcttgtactgcttatgcagaagttattggaattggttgtatggtttggtatggagatttggttgatattctacactt |
2699836 |
T |
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| Q |
123 |
tgaacgtggcgatggaaatacattgcatattcgtcttgatcattctgatttaggtaa |
179 |
Q |
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| T |
2699835 |
tcaacatggagaaggaaacgctctgcacattcgtctcgcttattctgatttaggtaa |
2699779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 14521314 - 14521101
Alignment:
| Q |
19 |
tgtgaaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatggagatttggttgatgttcaac |
118 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||| ||||| ||||||||||||| |||||||||| |
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| T |
14521314 |
tgtgaaggtaattgtttggagaatgcttcttgtactgcttatgcagaagtaactggaattggttgtatggtttggcatggagatttggtcgatgttcaac |
14521215 |
T |
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| Q |
119 |
agtttgaacgtggcgatggaaatacattgcatattcgtcttgatcattctgatttaggtaaggtgcttcaaagggttccttaagctttgtttccatgtat |
218 |
Q |
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| || | ||| | || |||||| | || |||||||||||| ||| ||||||||||||||| | | |||||||||||||| |||||||||||||||||| |
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| T |
14521214 |
acttaggacgcgatgaaggaaattcgttatatattcgtcttgctcagtctgatttaggtaagatacatcaaagggttcctttagctttgtttccatgtat |
14521115 |
T |
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| Q |
219 |
atggaacttcaatt |
232 |
Q |
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|| || |||||||| |
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| T |
14521114 |
attgatcttcaatt |
14521101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 36289238 - 36289336
Alignment:
| Q |
19 |
tgtgaaggtaattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatggagatttggttgatgttcaa |
117 |
Q |
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|||||||| |||||| || |||||| |||||||||||| |||| | | | ||||||||||| |||||| ||||| |||| || || |||||| ||||| |
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| T |
36289238 |
tgtgaaggaaattgtctgaagaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatggggagttagttgattttcaa |
36289336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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