View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_low_13 (Length: 341)
Name: NF5446_low_13
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_low_13 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 6732361 - 6732680
Alignment:
| Q |
16 |
actttcgacctctgttgaatgcttcaattgggtatttcagagcctctcccaccacagctccaacaacagctccacccactagctcagccataactatgca |
115 |
Q |
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| T |
6732361 |
actttcgacctctgttgaatgcttcaattgggtatttcagagcctctcccaccacagctccaacgacagctccacccactagatcacccataactgtgca |
6732460 |
T |
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| Q |
116 |
agtaataatgtgttttgttgtttttgtggaatcaaacaaatgttttctagcattggatgagaaagaaaactcatgaactcaagttatttatagatagaga |
215 |
Q |
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| T |
6732461 |
agtaataatgtgttttgttgtttttgtggaatcaaacaaatgtatgtt-----ttga-gaaaaaaaaaactcatcaactcaagttatttatagatagaga |
6732554 |
T |
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| Q |
216 |
ttgtgatttttggtattcattttaccccactttacctttgcctacatttcgttgtagtttcttggttttgtcgtacttgttccgcgttcacgttttattt |
315 |
Q |
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| T |
6732555 |
ttgtgatttttggtcttcattttaccccactttacctttgcctacatttcgttgtagtttcttggttttgtcgtactagttccgcgttcacgttttattt |
6732654 |
T |
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| Q |
316 |
attgttttgtactaaacatctctgct |
341 |
Q |
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| T |
6732655 |
attgttttgtactaaacatttctgct |
6732680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 6763494 - 6763561
Alignment:
| Q |
141 |
gtggaatcaaacaaatgttttctagcattggatgagaaagaaaactcatgaactcaagttatttataga |
209 |
Q |
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| T |
6763494 |
gtggaatcaaacaaatgttttctagcattggatgag-aagaaaacacatgaactcaagttatttataga |
6763561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 6762904 - 6762964
Alignment:
| Q |
152 |
caaatgttttcta---gcattggatgagaaagaaaactcatgaactcaagttatttataga |
209 |
Q |
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| T |
6762904 |
caaatgttttctacgagcatcggatgagaaaaaaaactaatgaactcaagttatttataga |
6762964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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