View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_low_15 (Length: 336)
Name: NF5446_low_15
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 56 - 210
Target Start/End: Complemental strand, 18325710 - 18325556
Alignment:
| Q |
56 |
aaaaacacaaaattacagcttactagttgtgataacttttacaaagagaaaacttcaatggtacgtatgtaccaagaaaagagaacacttcctcaagggg |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18325710 |
aaaaacacaaaattacagcttactagttgtgataacttttacaaagtgaaaacttcaatggtacgtatgtaccaagaaaagagaacacttcctcaaggga |
18325611 |
T |
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| Q |
156 |
gaaagtgtttggaaatgataatcaacaatattcacattggtattcaaatgaaaaa |
210 |
Q |
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| T |
18325610 |
gaaagtgtttggaaatgataatcaacaatattcacattggtattcaaatgaaaaa |
18325556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 206 - 319
Target Start/End: Complemental strand, 18325533 - 18325420
Alignment:
| Q |
206 |
aaaaaccaaactaaaacctcaatagccaaaaactctaaaccaatcaatctcttctcttttctgaatgcatcattcttctgtgttgtacttcttgcttggc |
305 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18325533 |
aaaaaccaaactaaaaccccaatagccaaaaactctaaaccaatcaatctcttctcttttctgaatgcatcattcttctgtgttgtacttcttgcttggc |
18325434 |
T |
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| Q |
306 |
tgcttgctccatct |
319 |
Q |
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| T |
18325433 |
tgcttgctccatct |
18325420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 27749612 - 27749664
Alignment:
| Q |
8 |
aattcaaaacgagatacaaaagttgtataaatttcaatgataaggtttaaaaa |
60 |
Q |
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| T |
27749612 |
aattcaaaacaagatataagagttgtataaattgcaaagataaggtttaaaaa |
27749664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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