View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_low_16 (Length: 332)
Name: NF5446_low_16
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 3 - 314
Target Start/End: Complemental strand, 35091431 - 35091118
Alignment:
| Q |
3 |
agatggacatcatcactatcatacttaaaagataaagagagnnnnnnnn---tacatcaaaagaagtccattccaaattcagatttaaggattgagacat |
99 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| | || |||||| ||||||| |
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| T |
35091431 |
agatagacatgatcactatcatacttaaaagataaagagaagaaaaaaaaaatacaacaaaagaagtccactccaaattctg-ttaaaggatcgagacat |
35091333 |
T |
|
| Q |
100 |
tattgcagtttgctttaaggttcatgatgttcatgaaccaagtagcttcatgtcatcaacattacagtgcatgaataccaaaaacagctcctttgttgaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35091332 |
tattgcagtttgctttaaggttcatgatgttcatgaaccaagtagcttcatgtcatcaacattacagtgcatgaataccaaaaacagctcctttgttgaa |
35091233 |
T |
|
| Q |
200 |
gtctctagaagccgttgcgaaaccggaaactttcagcttagcataagcttcatggaaagagcaatcataaagatcctgcccttgtggtgatccatcattg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35091232 |
gtctctagaagccgttgcgaaaccggaaactttcagcttagcataagcctcatggaaagagcaatcataaagatcctgcccttgtggtgatccatcattg |
35091133 |
T |
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| Q |
300 |
tagtggctagtactc |
314 |
Q |
| |
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||||||||||||||| |
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| T |
35091132 |
tagtggctagtactc |
35091118 |
T |
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