View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5446_low_17 (Length: 330)
Name: NF5446_low_17
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 325
Target Start/End: Original strand, 9506460 - 9506761
Alignment:
| Q |
30 |
cctcaacagtcatccctcaccagctcacccactctttctcgccggccaccgtaagcttctcacttttccaggctttcattttcatgtttcactttcagag |
129 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9506460 |
cctcaactgtcatccctcaccagctcacccactctttctcgccggccaccgtaagcttctcacttttccaggctttcattttcatgtttcactttcagag |
9506559 |
T |
|
| Q |
130 |
ttgnnnnnnnncttctcacttacgatatt-----gtattgtattgtaaagtttccatttttgtaacaatctcattgtttccttattcatatattctgaaa |
224 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9506560 |
ttgttttttttcttctcacttacgatattgtattgtattgtattgtaaagtttccatttttgtaacaatctcattgtttccttattcatatattctgaaa |
9506659 |
T |
|
| Q |
225 |
tgaatatttatattttcatttacttctcttaaattatggtttctaattctgaaattgttcatcatttg--catttcatttgagattttgtttttcttctc |
322 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||||||||||| ||||||||| || |
|
|
| T |
9506660 |
tgaatatttatattttcattttcttctcttaaattatggttactatttc-gaaattgttcatcatttgcacatttcatttgagatttcgtttttcttgtc |
9506758 |
T |
|
| Q |
323 |
act |
325 |
Q |
| |
|
||| |
|
|
| T |
9506759 |
act |
9506761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 54 - 312
Target Start/End: Original strand, 40687011 - 40687239
Alignment:
| Q |
54 |
tcacccactctttctcgccggccaccgtaagcttctcacttttccaggctttcattttcatgtttcactttcagagttgnnnnnnnncttctcacttacg |
153 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
40687011 |
tcaccccctctttctcgccggccaccgtaagcttctcactctt---ggctttcattttcatgtttcactttcagacttgttttctttcttctcacttacg |
40687107 |
T |
|
| Q |
154 |
atattgtattgtattgtaaagtttccatttttgtaacaatctcattgtttccttattcatatattctgaaatgaatatttatattttcatttacttctct |
253 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
40687108 |
atattatattgta-----aagtttccatttttgtaacaatctcattgtttctttattc----------------------atattttcatttacttctct |
40687180 |
T |
|
| Q |
254 |
taaattatggtttctaattctgaaattgttcatcatttgcatttcatttgagattttgt |
312 |
Q |
| |
|
|||||||||||| ||| |||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40687181 |
taaattatggttactatttctcaaatcattcatcatttgcatttcatttgagattttgt |
40687239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University