View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5446_low_19 (Length: 321)

Name: NF5446_low_19
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5446_low_19
NF5446_low_19
[»] chr8 (3 HSPs)
chr8 (7-215)||(26948183-26948394)
chr8 (212-288)||(26947295-26947371)
chr8 (212-288)||(26949618-26949694)
[»] chr7 (2 HSPs)
chr7 (212-288)||(5985197-5985273)
chr7 (212-288)||(8541876-8541952)
[»] scaffold0373 (1 HSPs)
scaffold0373 (212-284)||(14991-15063)
[»] chr4 (1 HSPs)
chr4 (212-284)||(6825210-6825282)
[»] chr6 (1 HSPs)
chr6 (209-288)||(13465288-13465367)
[»] chr5 (2 HSPs)
chr5 (140-200)||(20508014-20508074)
chr5 (212-256)||(20577379-20577423)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 26948394 - 26948183
Alignment:
Q  7 actatgaccaacatcttt---atgccacacaagattccaatgacgaattgagtagaaattgatacttggatagtggttgcagcaatcacatggccaaaga 103  Q
    ||||||||||||||||||   |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26948394 actatgaccaacatcttttttatgccacacaagattccaataacgaattgagtagaaattggtacttggatagtggttgcagcaatcacatggccaaaga 26948295  T
Q  104 tgagagaatcttcaaggatatcgattactctgtcaaagtaaaggttcgactgggaaacgactcagtcgtggaatctaaaggcaaaggcactgtgatggtg 203  Q
    |||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  26948294 tgagagcatcttcaaggatattgattactttgtcaaagtaaaggttcgactgggaaacgactcagtcatggaatctaaaggcaaaggccctgtgatggtg 26948195  T
Q  204 gaaactaagaaa 215  Q
    ||||||||||||    
T  26948194 gaaactaagaaa 26948183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 26947371 - 26947295
Alignment:
Q  212 gaaatgtcatgaagaatctagaaagaactatctagaacatgacatccacactataaataggcaagcatgtactcatt 288  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26947371 gaaatgtcatgaagaatctagaaagaaatatctagaacatgacatccacactataaataggcaagcatgtactcatt 26947295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 26949694 - 26949618
Alignment:
Q  212 gaaatgtcatgaagaatctagaaagaactatctagaacatgacatccacactataaataggcaagcatgtactcatt 288  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26949694 gaaatggcatgaagaatctaaaaagaactatctagaacatgacatccacactataaataggcaagcatgtactcatt 26949618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 5985273 - 5985197
Alignment:
Q  212 gaaatgtcatgaagaatctagaaagaactatctagaacatgacatccacactataaataggcaagcatgtactcatt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5985273 gaaatgtcatgaagaatctagaaagaactatctagaacatgacatccacactttaaataggcaagcatgtactcatt 5985197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 8541876 - 8541952
Alignment:
Q  212 gaaatgtcatgaagaatctagaaagaactatctagaacatgacatccacactataaataggcaagcatgtactcatt 288  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8541876 gaaatgtcatgaagaatctagaaagaactatatagaacatgacatccacactataaataggcaagcatgtactcatt 8541952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 15063 - 14991
Alignment:
Q  212 gaaatgtcatgaagaatctagaaagaactatctagaacatgacatccacactataaataggcaagcatgtact 284  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15063 gaaatgtcatgaagaatctagaaagaactatctagaatatgacatccacactataaataggcaagcatgtact 14991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 6825210 - 6825282
Alignment:
Q  212 gaaatgtcatgaagaatctagaaagaactatctagaacatgacatccacactataaataggcaagcatgtact 284  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6825210 gaaatgtcatgaagaatctagaaagaactatctagaatatgacatccacactataaataggcaagcatgtact 6825282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 13465367 - 13465288
Alignment:
Q  209 taagaaatgtcatgaagaatctagaaagaactatctagaacatgacatccacactataaataggcaagcatgtactcatt 288  Q
    ||||||||||||||||||||||||||||||   ||||||| |||| ||  ||||||||||||||||| ||||||||||||    
T  13465367 taagaaatgtcatgaagaatctagaaagaagcctctagaatatgatatttacactataaataggcaaacatgtactcatt 13465288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 20508074 - 20508014
Alignment:
Q  140 agtaaaggttcgactgggaaacgactcagtcgtggaatctaaaggcaaaggcactgtgatg 200  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||    
T  20508074 agtaaaggttcgactaggaaatgactcagtcgttgaatctaaaggcaaaggcactatgatg 20508014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 20577379 - 20577423
Alignment:
Q  212 gaaatgtcatgaagaatctagaaagaactatctagaacatgacat 256  Q
    |||||||||||| ||| |||||||||||||||||||  |||||||    
T  20577379 gaaatgtcatgacgaacctagaaagaactatctagattatgacat 20577423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University