View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_low_22 (Length: 303)
Name: NF5446_low_22
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 42898723 - 42898992
Alignment:
| Q |
18 |
aaaatcacgctaacaccggaaaatttacatttatcccaacatgcacttggtactctcaagtctaaggagagtgagactaaaaaa-------------gag |
104 |
Q |
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| T |
42898723 |
aaaatcacgctaacaccggaaaatttacatttatcccaacatgcacttagtactctcaagtctaaggagagtgagactaaaaaaaatgactgaaaaagag |
42898822 |
T |
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| Q |
105 |
agaatgagtgacagtgaatatttcttgactgttatagcattttagtaacagtatttgtgtt----tgtttgtttatatattatatgattttcaggaggga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42898823 |
agaatgagtgacagtgaatatttcttgactgttatagcattttagtaacagtatttgtgtttgtttgtttgtttatatattatatgattttcaggaggga |
42898922 |
T |
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| Q |
201 |
cagtttcataactcacagagccttctgtgatgcattagctgaggagagttcaagaaccgtaattcctcaa |
270 |
Q |
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| T |
42898923 |
cagtttcataactcacagagccttctgtgatgcattagctgaggagagttcaagaaccgtaattcctcaa |
42898992 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 50786145 - 50786101
Alignment:
| Q |
192 |
caggagggacagtttcataactcacagagccttctgtgatgcatt |
236 |
Q |
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| T |
50786145 |
caggagagacagtttcataactcacagagccttctgtgatgcatt |
50786101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 4160895 - 4160929
Alignment:
| Q |
196 |
agggacagtttcataactcacagagccttctgtga |
230 |
Q |
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| T |
4160895 |
agggacagtttcatcactcacagagccttctgtga |
4160929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 5788056 - 5787997
Alignment:
| Q |
196 |
agggacagtttcataactcacagagccttctgtgatgcattagctgaggagagttcaaga |
255 |
Q |
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| T |
5788056 |
agggacagtttcataacacatagagcattttgtgatgcattagcagaagagagtgcaaga |
5787997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 30517399 - 30517352
Alignment:
| Q |
192 |
caggagggacagtttcataactcacagagccttctgtgatgcattagc |
239 |
Q |
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| T |
30517399 |
caggagagacagcttcataactcacagagccttttgtgatgccttagc |
30517352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 44150203 - 44150153
Alignment:
| Q |
192 |
caggagggacagtttcataactcacagagccttctgtgatgcattagctga |
242 |
Q |
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| T |
44150203 |
caggagagacagttttataacccacagagcattctgtgatgcattaactga |
44150153 |
T |
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