View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_low_3 (Length: 499)
Name: NF5446_low_3
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 16 - 490
Target Start/End: Original strand, 3040870 - 3041345
Alignment:
| Q |
16 |
gcatctatactagaatttagaggactctaagaaccgcacactacatatatagtatacaatttgaaggagttttaagaaagaggttttgggaccactaaat |
115 |
Q |
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| T |
3040870 |
gcatctatactagaatttagaggactctaagaaccgcacactacatatatagtatacaatttgaaggagttttaagaaagaggttttgggaccactaaat |
3040969 |
T |
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| Q |
116 |
tcactaacatttgccgatatatctcttcaacaacnnnnnnnnnnnntacaatttgatgttatatatattttgcttgataatatatcttgtgccctaaata |
215 |
Q |
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| T |
3040970 |
tcactaacatttgcctatatatctcttcaacaacaaaaagaaaaaatacaatttgatgttatatatattttgcttaataatatatcttgtgccctaaata |
3041069 |
T |
|
| Q |
216 |
ttttgcatgcatatccaaaaatcgtgccacaaataataagacttgaaaatgaaatacaagaa-aagnnnnnnnntgtaactcaccaattccacaacaacc |
314 |
Q |
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| T |
3041070 |
ttttgcatgcatatccaaaaatcgtgccacaaataataagacttgaaaatgaaatacaagaagaagaaaaaaaatgtaactcaccaattccacaacaacc |
3041169 |
T |
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| Q |
315 |
aaagagcttctccaaagccaaagctaactccaagtatcccttatgcaaaccaagatcaatcttacgcaagtaaggagctccatccatgctaaccttcatg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3041170 |
aaagagcttctccaaagccaaagctaactccaagtatcccttatgcaaaccaagatcaatcttacgcaagtaaggagctccatccatgctaaccttcatg |
3041269 |
T |
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| Q |
415 |
tacatttttgaaccttcattcatgttcttcttccggtacgaacacaccggaggccatcccacaacttgattcttct |
490 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3041270 |
tacatttttgaaccttcattcatattcttcttccggtacgaacacaccggaggccatcccacaacttgattcttct |
3041345 |
T |
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