View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_low_34 (Length: 235)
Name: NF5446_low_34
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 13202807 - 13203024
Alignment:
| Q |
1 |
tttgagccaatatttcaaccacactaggaggaatatcttgagcagttcttgatgggttgttatataaaatgataggtcctactgaaagtacactattgta |
100 |
Q |
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| T |
13202807 |
tttgagccaatatttcaaccacactaggaggaatatcttgagcagttcttgatgggttgttatataaaatgataggtcctactgaaagtacacttttgta |
13202906 |
T |
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| Q |
101 |
atgagcaaccaaaccttccattgaggtttttccatagtaagggtttatttgaagtgatgcatccattccaacagcaaaaccttgctcagttagactaatt |
200 |
Q |
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| T |
13202907 |
atgagcaaccaaaccttccattgaggtttttccatagtaagggtttatttgaagtgatgcatccattccaacagcaaaaccttgctcagttagactaatt |
13203006 |
T |
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| Q |
201 |
gctagtgatgttgagttg |
218 |
Q |
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| T |
13203007 |
gctagtgatgttgagttg |
13203024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 13188621 - 13188807
Alignment:
| Q |
1 |
tttgagccaatatttcaaccacactaggaggaatatcttgagcagttcttgatgggttgttatataaaatgataggtcctactgaaagtacactattgta |
100 |
Q |
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| T |
13188621 |
tttgagccaatatttcaattacactaggaggaatatcttgaccactccttgaaggtacattgtatattatgatagggcctacaggaagcaaactattata |
13188720 |
T |
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| Q |
101 |
atgagcaaccaaaccttccattgaggtttttccatagtaagggtttatttgaagtgatgcatccattccaacagcaaaaccttgctc |
187 |
Q |
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| T |
13188721 |
atgagcaaccaaacctgcatttgaggtttttccatagtaagggtttatatgaagtgctgcatccattccaacagcaaaaccttgctc |
13188807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 191
Target Start/End: Original strand, 13180363 - 13180549
Alignment:
| Q |
5 |
agccaatatttcaaccacactaggaggaatatcttgagcagttcttgatgggttgttatataaaatgataggtcctactgaaagtacactattgtaatga |
104 |
Q |
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| T |
13180363 |
agccaatatttcaattacactaggaggaatatcttgaccactccttgaaggtacattgtatatgatgatagggcctataggaagcaaactattataatga |
13180462 |
T |
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| Q |
105 |
gcaaccaaaccttccattgaggtttttccatagtaagggtttatttgaagtgatgcatccattccaacagcaaaaccttgctcagtt |
191 |
Q |
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| T |
13180463 |
gcaaccaaacctgcatttgaggtttttccatagtaagggtttatatgaagtgcagcatccattccaacagcgaagcctcgctcagtt |
13180549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 13191830 - 13191931
Alignment:
| Q |
83 |
tgaaagtacactattgtaatgagcaaccaaaccttccattgaggtttttccatagtaagggtttatttgaagtgatgcatccattccaacagcaaaacct |
182 |
Q |
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|||||| ||||||||||||||||||| |||||| || ||||||||||||||||||||| ||||| || | || ||||||||||||||||| |||||| |
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| T |
13191830 |
tgaaagcacactattgtaatgagcaatcaaaccatctgatgaggtttttccatagtaaggatttatatgcattgcagcatccattccaacagcgaaacct |
13191929 |
T |
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| Q |
183 |
tg |
184 |
Q |
| |
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|| |
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| T |
13191930 |
tg |
13191931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 39752396 - 39752308
Alignment:
| Q |
102 |
tgagcaaccaaaccttccattgaggtttttccatagtaagggtttatttgaagtgatgcatccattccaacagcaaaaccttgctcagt |
190 |
Q |
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| T |
39752396 |
tgagcaaccataccatccaaggaggttttgccatagtaagggtttatatgaagggcaccatgcattccaaccgcaaaaccttgctcagt |
39752308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 28176947 - 28176858
Alignment:
| Q |
102 |
tgagcaaccaaaccttccattgaggtttttccatagtaagggtttatttgaagtgatgcatccattccaacagcaaaaccttgctcagtt |
191 |
Q |
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| T |
28176947 |
tgagcaaccatgccttccaaggaggttttcccatagtaagggtttatatgaagagcaccatgcattccaaccgcaaaaccctgctcagtt |
28176858 |
T |
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