View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_low_4 (Length: 492)
Name: NF5446_low_4
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 473
Target Start/End: Original strand, 11392875 - 11393341
Alignment:
| Q |
8 |
cgaagaatattaagcagtgaaaggggaagattataatcccgaaagccacaatgtaactcaataataagacacgaatgtccatcacaaagttgaatagttc |
107 |
Q |
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| T |
11392875 |
cgaagaaaattaagcagtgaaaggggaagattataatcccgaaagcaataatgtaactcaataataagacacgaatgtccatcacaaagttgaatagttc |
11392974 |
T |
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| Q |
108 |
ccggtttggtcccggaattggtttcatcacgatcattaaggataattttacgccactcggtatcaaatccgatcaccttggttccataattgtctgtagg |
207 |
Q |
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| T |
11392975 |
ccggtttggtccgggaattggttccatcttgatccttatcgataattttacgccactcagtatcaaatccgatcaccttggttccatgattgtctgtagg |
11393074 |
T |
|
| Q |
208 |
gcgtaagaaagacgatatatgttcgtcaatctctttcttataatctgtaatagtggttttgatttccattccatttagctcaaacgatagaactttggtg |
307 |
Q |
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| T |
11393075 |
gcgtaagaaagacgatatatgttcgtcaatcactttcttttgatctgtaatggtggttttgatttccattccatttagctcaaacgatagaactttggtg |
11393174 |
T |
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| Q |
308 |
gcatacatgatgttctctgcttcacaaaatagggatgccacggttatttataa-gataggcgtttgtgacatttaatcagtagtataatctcaaaagcca |
406 |
Q |
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| T |
11393175 |
tcatgcatgaggtattctgcttcataacatagggatgccacggttatttataaggataggcgtttgtgatatttaatcagtagtataatctcaaaagcca |
11393274 |
T |
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| Q |
407 |
cattgatttgattttgatgtagaaagttggatagatattccatctcgtaaattgcattggttcattc |
473 |
Q |
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| T |
11393275 |
cattgatttgattttgatgtagaaagctggatagatattccatctcgtaaattgcatttgttcattc |
11393341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 55 - 395
Target Start/End: Original strand, 11386927 - 11387269
Alignment:
| Q |
55 |
acaatgtaactcaataataagacacgaatgtccatcacaaagttgaatagttcccggtttggtcccggaattggtttcatcacgatcattaag-gataat |
153 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||| | |||||| |
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| T |
11386927 |
acaatgtaactcaataataagacatgaatgtccatcacaaagttgaagagttcccggtttggtctgggaattggtttcatcatgatcatttaccgataat |
11387026 |
T |
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| Q |
154 |
tttacgccactcggtatcaaatccgatcaccttggttccataattgtctgtagggcgtaagaaagacgatatatgttcgtcaatctctttcttataatct |
253 |
Q |
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| T |
11387027 |
tttacgccactcggtatcaaatccgatcaccttggttacataattgtctgtagggtgtaagaaagacgacatatgtttgtcaatcactttcttttgattt |
11387126 |
T |
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| Q |
254 |
gtaatagtggttttgatttccattccatttagctcaaacgatagaactttggtggcatacatgatgttctctgcttcacaaaatagggatgccacggtta |
353 |
Q |
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| T |
11387127 |
gtaatagtggttttgatttccattccatttagctcaaacgatagaactttggtgtcatacatgatgttctctgcttcacaaaatagggatgccacggtta |
11387226 |
T |
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| Q |
354 |
tttata-agataggcgtttgtgacatttaatcagtagtataat |
395 |
Q |
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|||||| |||| |||| |||||||||| |||||||||||||| |
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| T |
11387227 |
tttatagggataagcgtgtgtgacatttgatcagtagtataat |
11387269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 292
Target Start/End: Original strand, 17198516 - 17198660
Alignment:
| Q |
148 |
gataattttacgccactcggtatcaaatccgatcaccttggttccataattgtctgtagggcgtaagaaagacgatatatgttcgtcaatctctttctta |
247 |
Q |
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||||||| ||||||||||||||||| || || ||||| ||||| | ||||| ||||||||||||||||| |||||||| ||||||||| ||||| | |
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| T |
17198516 |
gataattggacgccactcggtatcaatcccaataaccttcgttccgtgattgttggtagggcgtaagaaagatgatatatgatcgtcaatcaatttctca |
17198615 |
T |
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| Q |
248 |
taatctgtaatagtggttttgatttccattccatttagctcaaac |
292 |
Q |
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| T |
17198616 |
tcatctgtcacggtggtttggatttcatctccattaagctcaaac |
17198660 |
T |
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