View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5446_low_5 (Length: 440)
Name: NF5446_low_5
Description: NF5446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5446_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 29607222 - 29607642
Alignment:
| Q |
1 |
agttcagatgaaggaccgtcaccagcacccagtcccagtgcggtaatatccttttccattttactttaagttacaattctatatttacggacctctttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29607222 |
agttcagatgaaggaccgtcaccagcacccagtcccagtgcggtaatatctttttccattttactttaagttacaattctatatttacggacctctttgg |
29607321 |
T |
|
| Q |
101 |
tctggattatgccgcattaacgaattcatgcaatctttgtcatctgatctttatcagacagattgtactctgacttggcaaaacttgctaaagcttcttt |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29607322 |
tctggatcatgccgcattaacgaattcatgcaatctttgtcatctgatctttatcagacagattgtactctgacttggcaaaacttgctaaagcttcttt |
29607421 |
T |
|
| Q |
201 |
tatcgaatcttatgattttatgtttcacagaatggtgcacaatcttaccaagggcaatggagaaagatgttggcaactggtggaattgctattgccattt |
300 |
Q |
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| T |
29607422 |
tatcgaatcttatgattttatgtttcacagaatggtgcacaatcttaccaagggcaatggagaaagatgttggcaactggtggaattgctattgccattt |
29607521 |
T |
|
| Q |
301 |
tgttatgtgtcacttgagtaactgcagaagatgctcatatgacaaaacatggattcgagcgaaacggttatttggtttgcaaaaatataaaattatttca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29607522 |
tgttatgtgtcacttgagtaactgcagaagatgctcatatgacaaaacatggattcaagcgaaacggttatttggtttgcaaaaatataaaattatttca |
29607621 |
T |
|
| Q |
401 |
tatgtatggaattgaatgatg |
421 |
Q |
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||||||||||||||||||||| |
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| T |
29607622 |
tatgtatggaattgaatgatg |
29607642 |
T |
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