View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5447_low_1 (Length: 396)
Name: NF5447_low_1
Description: NF5447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5447_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 37148036 - 37148396
Alignment:
| Q |
16 |
attagttataagtaatttgaagggtcacttatataagaaaaaatcaaatctaaattcaacagtgactcataaaatttatcctttaaatgaatttagcttt |
115 |
Q |
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| T |
37148036 |
attagttgtaagtaatttgaagggtcacttatataagaaaaaatcaaatctaaattcaacagtgactcataaaatttatcctttaaatgaatttagcttt |
37148135 |
T |
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| Q |
116 |
gggcatgagcaattttgcatgaaattttacagccaatataattatagcactcaaacatactcaaagtaggtaatcatgtacaatgtgtgtgtatataccc |
215 |
Q |
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| T |
37148136 |
gggcatgagcaattttgcatgaaattttacagccagtataattatagcactcaaacatactcaaagtaggtaatcatgtacaatgtgtgtgtatataccc |
37148235 |
T |
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| Q |
216 |
ggaaatgtggtcacttttcttaactatttttcaacttcttcttgtaacaaaaaatatcaaaaagggctaactcttatttggcatgttatagtttgaaaga |
315 |
Q |
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| T |
37148236 |
ggaaatgtggtctcttttcttaactatttttcaa---cttcttgtaataaaaaacatcgaaaagggctaactcttatttggcatattatagtttgaaaga |
37148332 |
T |
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| Q |
316 |
tttgggaggcaagaaatgtggttattttttcttcgcagaatccagaggtggaagacatagttga |
379 |
Q |
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| T |
37148333 |
tttgggaggcacgaaatgtggttattttttcttcgaagaacccagaggtggaagacatagttga |
37148396 |
T |
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