View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5447_low_2 (Length: 236)
Name: NF5447_low_2
Description: NF5447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5447_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 38448758 - 38448959
Alignment:
| Q |
20 |
ttggaactcattattattgattcctaatcatcctttatttccatgtcatcaaaatggtttctattagcgtacattccaaagtcatttcgaagcttctgat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
38448758 |
ttggaactcattattattgattcctaatcatcctttatttccatgtcatcaaaatggtttctattagcgtaaattccaaagtcatttccaagcttctgat |
38448857 |
T |
|
| Q |
120 |
ttaagaatgttacta---ttggagaaattgttacgttcagcatatgtttcagaacttctctcaaaacaatgagagattcttctctgaagttagggacagt |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38448858 |
ttaagaatgttactatatttggagaaattgttacgttcagcatatgtttcagaacttctctcaaaacaatgagagattcttctctgaagttagggacagt |
38448957 |
T |
|
| Q |
217 |
at |
218 |
Q |
| |
|
|| |
|
|
| T |
38448958 |
at |
38448959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 38440418 - 38440465
Alignment:
| Q |
171 |
cttctctcaaaacaatgagagattcttctctgaagttagggacagtat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
38440418 |
cttctctcaaaacaatgagagattcttctatgaagttagggactgtat |
38440465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 38448087 - 38448130
Alignment:
| Q |
89 |
tacattccaaagtcatttcgaagcttctgatttaagaatgttac |
132 |
Q |
| |
|
||||||| ||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
38448087 |
tacattctaaagtcatttcaaagcttctgttttaagaatgttac |
38448130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 38550182 - 38550139
Alignment:
| Q |
89 |
tacattccaaagtcatttcgaagcttctgatttaagaatgttac |
132 |
Q |
| |
|
||||||| ||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
38550182 |
tacattctaaagtcatttcaaagcttctgttttaagaatgttac |
38550139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University