View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448-Insertion-10 (Length: 600)
Name: NF5448-Insertion-10
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448-Insertion-10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 7 - 600
Target Start/End: Complemental strand, 26428128 - 26427533
Alignment:
| Q |
7 |
actttcttaattctagcacactgtcaggtctcactttctagattttctacctatattttctactttcaaacattcttgtacttatttgtctttaattaac |
106 |
Q |
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| T |
26428128 |
actttcttaattctagcacactgtcaggtctcactttctagattttctacctatattttctactttcaaacattcttgtacttatttgtctttaattaac |
26428029 |
T |
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| Q |
107 |
taaccctatttatgnnnnnnnnn--cttgcagattccctatttttgttaacatgggagcacttagcacatacttcaactataattgttacccttatcaac |
204 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26428028 |
taaccctatttatgtttttttttttcttgcagattccctatttttgttaacatgggagcacttagcacatacttcaactataattgttatccttatcaac |
26427929 |
T |
|
| Q |
205 |
ctattcaaactaccaacaactcagaaatcactacttttcaacatcatgaacaagaacgatttgtccaacaaaaccaccatttttcctctaactatttgaa |
304 |
Q |
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| T |
26427928 |
ctattcaaactaccaacaactcagaaatcactacttttcaacatcatgaacaagaacaatttgtccaacaaaaccaccatttttcctctaactatttgaa |
26427829 |
T |
|
| Q |
305 |
tgaaacttctcttttagatgaaagcttcatttttcaaactccttgtttttactcaactgaaacttaccctaacccttgtcaagatgatcaactacttgtt |
404 |
Q |
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| T |
26427828 |
tgaaacttctcttttagatgaaagcttcatttttcaaactccttgtttttactcaactgaaacttaccctaacccttgtcaagatgatcaactacttgtt |
26427729 |
T |
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| Q |
405 |
gactccactttttcttctcaaaatgatggcttcgtttcaatgaatgaaattttcccaaatgaggaagatttcaccaattacctgacatgtccaaaacgcc |
504 |
Q |
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| T |
26427728 |
gactccactttttcttctcaaaatgatggcttcgtttcaatgaatgaaattttcccaaatgaggaagatttcaccaattacctgacatgtccaaaacgcc |
26427629 |
T |
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| Q |
505 |
aaaagctatgctacgatgagaaaagagaggaaccacaacaagagcttttgaactcaactaannnnnnngtggatgagtttatgactaaccctaacc |
600 |
Q |
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| T |
26427628 |
aaaagctatgctacgatgagaaaagagaggaaccacaacaagagcttttgaactcaaccaatttttttgtggatgagtttatgactaaccctaacc |
26427533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 28008932 - 28009051
Alignment:
| Q |
145 |
tttttgttaacatgggagcacttagcacatacttcaactataattgttacccttatcaacctattcaaactacc---aacaactcagaaatcactacttt |
241 |
Q |
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| T |
28008932 |
tttttgttaacatgggagcacttagcacatacttcaattataattgttacccttatcaacctactcaaactaccaataacaactcagaaatcaccacttt |
28009031 |
T |
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| Q |
242 |
tcaacatcatgaacaagaac |
261 |
Q |
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| T |
28009032 |
tcaacatcatgaacaagaac |
28009051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 376 - 600
Target Start/End: Original strand, 28009109 - 28009348
Alignment:
| Q |
376 |
acccttgtcaagatgatcaactacttgttgactccactttttcttctcaaaatgatggcttcgtttcaatgaatgaaattttcccaaatgaggaaga--- |
472 |
Q |
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| T |
28009109 |
acccttgtcaagatcaacaactacttgttgactccactttttcttctcaaaatgatgactttgtttcaatgaatgaaattttcccaaatgaggaagattt |
28009208 |
T |
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| Q |
473 |
---tttcaccaattac---ctgacatgtccaaaacgccaaaagc---tatgct---acgatgagaaaagagaggaaccacaacaagagcttttgaactca |
560 |
Q |
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| T |
28009209 |
cattttcaacaactaccagcttccatgtccaaaacgccaaaagctgatatactatgaggaggagaaaagagaagagccacaacaagagcttttgaactca |
28009308 |
T |
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| Q |
561 |
actaannnnnnngtggatgagtttatgactaaccctaacc |
600 |
Q |
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| T |
28009309 |
accaatttttttatggatgagtttgtgactaaccctaacc |
28009348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 28009058 - 28009107
Alignment:
| Q |
295 |
actatttgaatgaaacttctcttttagatgaaagcttcatttttcaaact |
344 |
Q |
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| T |
28009058 |
actatttcaatgaagcttctcttttagatgaaagcttcatttttcaaact |
28009107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 28008852 - 28008889
Alignment:
| Q |
73 |
caaacattcttgtacttatttgtctttaattaactaac |
110 |
Q |
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| T |
28008852 |
caaacattctcgtacttgtttgtctttaattaactaac |
28008889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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