View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5448-Insertion-11 (Length: 545)
Name: NF5448-Insertion-11
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448-Insertion-11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 8 - 337
Target Start/End: Original strand, 29942032 - 29942361
Alignment:
| Q |
8 |
aaagggtggcccacataccagtggatggaaaagaaggtccagctgatgtatgtgtcatagaattgggtggaaccataggtacaatcttgaaaacattcct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29942032 |
aaagggtggcccacataccagtggatggaaaagaaggtccagctgatgtatgtgtcatagaattgggtggaaccataggtacaatcttgaaaacattcct |
29942131 |
T |
|
| Q |
108 |
caggcttcttcatggttagaattagatggattgttagtttctattgttttataatttgaatttaaattcttctggatgcaggtgatattgagtccatgcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29942132 |
caggcttcttcatggttagaattagatggattgttagtttctattgttttataatttgaatttaaattcttctggatgcaggtgatattgagtccatgcc |
29942231 |
T |
|
| Q |
208 |
ttttattcaagcattaggacatttctcatatagagtaggtgagaatacnnnnnnnatttacaaagtttgccctttggttttaaattgttgtagccgcaac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29942232 |
ttttattcaagcattaggacatttctcatatagagtaggtgagaatactttttttatttacaaagtttgccctttggttttaaattgttgtagccgcaac |
29942331 |
T |
|
| Q |
308 |
agcgtttgcaatggaagcctttttattgcg |
337 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
|
|
| T |
29942332 |
agcgtttgcaacggaagcctttttattgcg |
29942361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 367 - 450
Target Start/End: Original strand, 29942357 - 29942440
Alignment:
| Q |
367 |
ttgcgatggccttgcagagacttctaaaactgttattgtggctgcaattttatttgtggaccacaattaaaaacttacatgtcc |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29942357 |
ttgcgatggccttgcagagacttctaaaactgttattgtggctgcaattttagttgtggaccacaattaaaaacttacatgtcc |
29942440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 475 - 545
Target Start/End: Original strand, 29942467 - 29942537
Alignment:
| Q |
475 |
atggagaggccgtttttctagttgttacatgatatatgttcatttgcaggtgctaacaacttttgcttggt |
545 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29942467 |
atggagaggctgtttttctagttgttacatgatatatgttcatttgcaggtgctaacaacttttgcttggt |
29942537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 18358249 - 18358306
Alignment:
| Q |
31 |
gatggaaaagaaggtccagctgatgtatgtgtcatagaattgggtggaaccataggta |
88 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
18358249 |
gatggaaaagaaggccctgctgatgtttgtgtcattgaattgggtggaactataggta |
18358306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 26519661 - 26519718
Alignment:
| Q |
31 |
gatggaaaagaaggtccagctgatgtatgtgtcatagaattgggtggaaccataggta |
88 |
Q |
| |
|
||||| |||||||| || || ||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
26519661 |
gatggtaaagaagggcctgccgatgtttgtgtcatcgaattgggtggaactataggta |
26519718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 10164122 - 10164090
Alignment:
| Q |
325 |
cctttttattgcggtaaaatacaggcaaatgtg |
357 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
10164122 |
cctttatattgcggtaaaatacaggcaaatgtg |
10164090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University