View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448-Insertion-13 (Length: 499)
Name: NF5448-Insertion-13
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448-Insertion-13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 9 - 499
Target Start/End: Original strand, 11406496 - 11406985
Alignment:
| Q |
9 |
ccaatctatgacactaatgatgatgcaatgaacttctggtaatttcagaattttcattccaatgtatagcttctctgaattgagaggaacactttagaga |
108 |
Q |
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| T |
11406496 |
ccaatctatgacactaatgatgatgtaatgaacttctggtaatttcagaattttcattccaatgtataggttctctgaattgagaggaacactttagaga |
11406595 |
T |
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| Q |
109 |
ataaaatatgaaattataacattgattggaaagtcgtgatcattaatattttaccaattccacaacatgtacatactttatcacaaactcaagcttcaac |
208 |
Q |
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| T |
11406596 |
ataaaatatgaaattataacattgattagaaagtcatgatcattaatattttaccaattccacaatatgtacatactttatcacaaactcaagcttcaac |
11406695 |
T |
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| Q |
209 |
tatttatttttcaattagtttaccctttaaagtgcaccattctctaattaatgataatataatctctataactaatactaatttgtcttttcacttctca |
308 |
Q |
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| T |
11406696 |
tatttatttttcaattagtttaccctttaaagtgcaccattctctaattaatgataatataatctctataactaatactaatttgtcttttcacttctca |
11406795 |
T |
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| Q |
309 |
acctatttttaactactagtttataccttcataaattaaatatatcatcactatgtaaaaaggtaaaaagaaaaggtgtagaaannnnnnnnnnnnnnnn |
408 |
Q |
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| T |
11406796 |
acctatttttaactactagtttataccttcataaattaaatatatcatcactatgtaaaaagg-caaaagaaaaggtgtagaaattttattttatttttt |
11406894 |
T |
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| Q |
409 |
gactaaaaaggtggtagaagttgttacctgtaaatggctcttcaaatgatataatgtcaaaccttttaatcccattaaccttagaacagac |
499 |
Q |
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| T |
11406895 |
gactaaaaaggtggtagaagttgttacctgtaaatggctcttcaaatgatataatgtcaaaccttttaatcccattaaccttagaacagac |
11406985 |
T |
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