View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448-Insertion-14 (Length: 403)
Name: NF5448-Insertion-14
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448-Insertion-14 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 7 - 403
Target Start/End: Original strand, 46344349 - 46344745
Alignment:
| Q |
7 |
aggaaaaatttctccaattgaactatagctcttagaaataagagaataaaggaaggagaatgccaaaaagtttcgtatacaaaaagtttcatatattgac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344349 |
aggaaaaatttctccaattgaactatagctcttagaaataagagaataaaggaaggagaatgccaaaaagtttcgtatacaaaaagtttcatatattgac |
46344448 |
T |
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| Q |
107 |
tgctaaccacaaattctataagccttaacagtgtcactaaagaattctattacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46344449 |
tgctaaccacaaattctataagccttaacagtgtcactaaagaaatctattacacaagggaggtacccttaacatactctgtaaaggccaaagcaatcaa |
46344548 |
T |
|
| Q |
207 |
acccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344549 |
acccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaa |
46344648 |
T |
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| Q |
307 |
gaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccaccc |
403 |
Q |
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| T |
46344649 |
gaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaacaaaccctgtccttttgctatttccaccc |
46344745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 147 - 403
Target Start/End: Complemental strand, 46452067 - 46451811
Alignment:
| Q |
147 |
agaattctattacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
246 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46452067 |
agaaatctattacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
46451968 |
T |
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| Q |
247 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451967 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
46451868 |
T |
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| Q |
347 |
gaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccaccc |
403 |
Q |
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| T |
46451867 |
gaattccaccaccagatatttgatcaaacaaaccctgtccttttgctatttccaccc |
46451811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 147 - 403
Target Start/End: Complemental strand, 46463035 - 46462779
Alignment:
| Q |
147 |
agaattctattacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
246 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46463035 |
agaaatctattacacaagggaggtacccttaacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
46462936 |
T |
|
| Q |
247 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462935 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
46462836 |
T |
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| Q |
347 |
gaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccaccc |
403 |
Q |
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| T |
46462835 |
gaattccaccaccagatatttgatcaaacaaaccctgtccttttgctatttccaccc |
46462779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 156 - 403
Target Start/End: Complemental strand, 46466448 - 46466201
Alignment:
| Q |
156 |
ttacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacata |
255 |
Q |
| |
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||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| |
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| T |
46466448 |
ttacacaagggcagtacccttaacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatg |
46466349 |
T |
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| Q |
256 |
acaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccac |
355 |
Q |
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| T |
46466348 |
ataccttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccac |
46466249 |
T |
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| Q |
356 |
caccagatatttgatcaaacaaaccctgtccatttgctatttccaccc |
403 |
Q |
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|||||||||||||||| ||||||||||| || ||||||| |||||||| |
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| T |
46466248 |
caccagatatttgatcgaacaaaccctgcccttttgctaattccaccc |
46466201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 156 - 403
Target Start/End: Complemental strand, 46471653 - 46471406
Alignment:
| Q |
156 |
ttacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacata |
255 |
Q |
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||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| |
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| T |
46471653 |
ttacacaagggcagtacccttaacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatg |
46471554 |
T |
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| Q |
256 |
acaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccac |
355 |
Q |
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| |||||||||||| ||||||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||| |||||||||||| ||||||| |
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| T |
46471553 |
ataccttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccac |
46471454 |
T |
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| Q |
356 |
caccagatatttgatcaaacaaaccctgtccatttgctatttccaccc |
403 |
Q |
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|||||||||||||||| ||||||||||| || ||||||| |||||||| |
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| T |
46471453 |
caccagatatttgatcgaacaaaccctgcccttttgctaattccaccc |
46471406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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