View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448-Insertion-15 (Length: 343)
Name: NF5448-Insertion-15
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448-Insertion-15 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 1946544 - 1946879
Alignment:
| Q |
8 |
gcttcctaattggtgaatttattaacatgttcagaagtgctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaaatatatctttatc |
107 |
Q |
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| T |
1946544 |
gcttcctaattggtgaatttattaacatgttcagaagtgctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaaatatatctttatc |
1946643 |
T |
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| Q |
108 |
agttacatttcttaggcaaacatttgtgccaccttgagcagcaatactccaagggacacaccatccattgcaatgatacataggaacacaccataaatac |
207 |
Q |
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| T |
1946644 |
agttacatttcttaggcaaacatttgtgccaccttgagcagcaatactccaagggacacaccatccattgcaatgatacataggaacacaccataaatac |
1946743 |
T |
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| Q |
208 |
actgatgttgatttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaagattacacccttaggagttgatgtggttc |
307 |
Q |
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| T |
1946744 |
actgatgttgatttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaagattacacccttaggagttgatgtggttc |
1946843 |
T |
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| Q |
308 |
cagaagtgtaacttattgaaattgtatcacattcat |
343 |
Q |
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| T |
1946844 |
cagaagtgtaacttattgaaattgtatcacattcat |
1946879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 1928442 - 1928767
Alignment:
| Q |
18 |
tggtgaatttattaacatgttcagaagtgctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaaatatatctttatcagttacattt |
117 |
Q |
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| T |
1928442 |
tggtgcatttattaatgagttcagaactgttggtgcaccccccgtgtgtgttactttgtgcttaaaaatattgtcaaatatccctttagcagttacattt |
1928541 |
T |
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| Q |
118 |
cttaggcaaacatttgtgccaccttgagcagcaatactccaagggacacaccatccattgcaatgatacataggaacacaccataaatacactgatgttg |
217 |
Q |
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| T |
1928542 |
ctttggcaaacatttgcgccaccttgagcagcaataccccaaggaagacaccatccattgcaatgaaacatgggaacacaccataaatacaccggcatag |
1928641 |
T |
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| Q |
218 |
atttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaagattacacccttaggagttgatgtggttccagaagtgta |
317 |
Q |
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| T |
1928642 |
acttcatctcattgagaagaattgtagccaaagaattaagataagcacctctgtggctatatactacacctttaggacttgatgttgttccagaagtgta |
1928741 |
T |
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| Q |
318 |
acttattgaaattgtatcacattcat |
343 |
Q |
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| T |
1928742 |
attcaaagaaattggatcccattcat |
1928767 |
T |
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