View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5448-Insertion-2 (Length: 1050)
Name: NF5448-Insertion-2
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448-Insertion-2 |
 | |
|
| [»] scaffold0810 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 605; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 8 - 636
Target Start/End: Complemental strand, 54182326 - 54181698
Alignment:
| Q |
8 |
agaacaagggtatcacagctgagaatgtcaatacaagatagtgttgtgttttgattgattattcatattcgttcttatgtttcttaatgtacagcaatgc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54182326 |
agaacaagggtatcacagctgagaatgtcaatacaagatagtgttgtgttttgattgattattcatattcgttcttatgtttcttaatgtacagcaatgc |
54182227 |
T |
|
| Q |
108 |
ttcttgcaccacaaactgtcttgctccctttgtgaagatcctggacgaagaattcggtaagcaaatattttgatactcatcatactgatagctagtatcg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
54182226 |
ttcttgcaccacaaactgtcttgctccctttgtgaagatcctggatgaagaattcggtaagcaaatattctgatactcatcatactgatagctagtattg |
54182127 |
T |
|
| Q |
208 |
taacagcaacatttgattcctagctcaaagccacttaatcatctttggtctatatttccaggaattgttaagggaaccatgacaaccacacattcctaca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54182126 |
taacagcaacatttgattcctagctcaaagccacttaatcatctttggtctatatttccaggaattgttaagggaaccatgacaaccacacattcctaca |
54182027 |
T |
|
| Q |
308 |
caggagaccaggtatattatcaaacatcatatgtttgttggaattgaaaacttgttttacgtatgtgtggtccaatatttatttccaatagcttcctagt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54182026 |
caggagaccaggtatattatcaaacatcatatgtttgttggaattgaaaacttgttttacgtatgtgtggtccaatatttatttccaatagcttcctagt |
54181927 |
T |
|
| Q |
408 |
cgatcttccaactgaaaatggataagaagttacaacaaggctcggcttggtctgacttacttaaaagaagataggtcagacagtgttgttaaaaagctta |
507 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54181926 |
cgatcatccaactgaaaatggataagaagttacaacaaggctcggcttggtctgacttacttaaaagaagataggtcaaacagtgttgttaaaaagctta |
54181827 |
T |
|
| Q |
508 |
tctttttattcttttatatatagaaactatatatgagtaacttttcaagtgggagaactttgataatttgatctgttttattattatttaacccaaattc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54181826 |
tctttttattcttttatatatagaaactatatatgagtaacttttcaagtgggagaactttgataatttgatctgttttattattatttaacccaaattc |
54181727 |
T |
|
| Q |
608 |
tattattctcttaaaagatatcttttagc |
636 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
54181726 |
tattattctcttaaaaaatatcttttagc |
54181698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 661 - 977
Target Start/End: Complemental strand, 54181678 - 54181363
Alignment:
| Q |
661 |
tatcaaacaacttgagctttatttctaaagctcttatttttaattttaaagtgattttttgtgccaaaacaaatcaagccaaacgaagtctaaaagttgt |
760 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
54181678 |
tatcaaacaacttgagctttatttctaaagctcttatttttaattttaaagtgatttttagtgccaaaacaaatcaagtcaaacaaagtctaaaagttgt |
54181579 |
T |
|
| Q |
761 |
gtttgtgcagaggcttctggatgcttcacacagagacttgag-agagccagggctgcagcactgaacattgtccccaccagcacaggagcagccaaggct |
859 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54181578 |
gtttgtgcagaggcttctggatgcttcacacagagacttgagaagagccagggctgcagcactgaacattgtccccaccagcacaggagcagccaaggct |
54181479 |
T |
|
| Q |
860 |
gtctctctagtgctggcacagctcaagggaaagctccatgggaatcgccctttcgtgtggcaacacctaatgtttcagttgttggaccttgtggtgaatg |
959 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| || |||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
54181478 |
gtctctctagtgctgccacagctcaagggaaagct-caacggaatcgccc-ttcgtgtgccaacacctaatgtttcagttgtt-gaccttgtggtgaatg |
54181382 |
T |
|
| Q |
960 |
ttgcg-agaagggtatttc |
977 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
54181381 |
ttgcgaagaagggtatttc |
54181363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 10 - 381
Target Start/End: Complemental strand, 19748846 - 19748475
Alignment:
| Q |
10 |
aacaagggtatcacagctgagaatgtcaatacaagatagtgttgtgttttgattgattattcatattcgttcttatgtttcttaatgtacagcaatgctt |
109 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
19748846 |
aacaagggtatcacaactgagaatgtcaatgcaagatagtgttgtgttttgattgattattcatattcattcttatgtttcttaatgtacaacaatgctt |
19748747 |
T |
|
| Q |
110 |
cttgcaccacaaactgtcttgctccctttgtgaagatcctggacgaagaattcggtaagcaaatattttgatactcatcatactgatagctagtatcgta |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19748746 |
cttgcaccacaaactgtcttgctccctttgtgaagatcctggatgaagaattcggtaagcaaaaattttgatactcatcatactgatagctagtattgta |
19748647 |
T |
|
| Q |
210 |
acagcaacatttgattcctagctcaaagccacttaatcatctttggtctatatttccaggaattgttaagggaaccatgacaaccacacattcctacaca |
309 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19748646 |
acaacaacatttgattcctagctcaaagccacctaattatctttggtctatatttccaggaattgttaagggaaccatgacaaccacacattcctacaca |
19748547 |
T |
|
| Q |
310 |
ggagaccaggtatattatcaaacatcatatgtttgttggaattgaaaacttgttttacgtatgtgtggtcca |
381 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19748546 |
tgagaccaggtatattatcaaacatcatatatttgttggaattgaaaacttgttttacttatgtgtggtcca |
19748475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 32729733 - 32729683
Alignment:
| Q |
99 |
cagcaatgcttcttgcaccacaaactgtcttgctccctttgtgaagatcct |
149 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||| ||| |||| |
|
|
| T |
32729733 |
cagcaatgcttcttgcaccactaactgccttgctccctttgtcaaggtcct |
32729683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 664 - 709
Target Start/End: Original strand, 24725083 - 24725128
Alignment:
| Q |
664 |
caaacaacttgagctttatttctaaagctcttatttttaattttaa |
709 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
24725083 |
caaacaactttagctttaattctaaagcacttatttttaactttaa |
24725128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 391
Target Start/End: Complemental strand, 6224891 - 6224508
Alignment:
| Q |
8 |
agaacaagggtatcacagctgagaatgtcaatacaagatagtgttgtgttttgattgattattcatattcgttcttatgtttcttaatgtacagcaatgc |
107 |
Q |
| |
|
||||||| ||||||| || ||||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
6224891 |
agaacaacggtatcatagttgagaatgtcaatgcaagatagtgtcgtgtttttattgattattcatattcattcctatgtttcttaatgtacagcaatgc |
6224792 |
T |
|
| Q |
108 |
ttcttgcaccacaaactgtcttgctccctttgtgaagatcctggacgaagaattcggtaagcaaatattttgatactcatcatactgatagctagtatcg |
207 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| || | |||||||||||| ||||||||||||| | |
|
|
| T |
6224791 |
ttcttgcaccacaaactgtgttgctccctttgtgaagatcctggatgaagaattcgctaagcaaaagttctaatactcatcatattgatagctagtattg |
6224692 |
T |
|
| Q |
208 |
taacagcaacatttgattcctagctcaaagccacttaatcatctttggtctatatttccaggaattgttaagggaaccatgacaaccacacattcctaca |
307 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
6224691 |
taacaacaacatttgattcctagcttaaagccacttaattatcgttggtctatatttccatgaattgttaaggaaaccatgacaaccatacattcctaca |
6224592 |
T |
|
| Q |
308 |
caggagaccaggtatattatcaaacatcatatgtttgttggaattgaaaacttgttttacgtatgtgtggtccaatatttattt |
391 |
Q |
| |
|
|| ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
6224591 |
caagagaccacgtatattatcaaacatcgtatatttgttggaattgaaaacttgttttacttatgtgtggtccattatttattt |
6224508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 160 - 305
Target Start/End: Original strand, 28247127 - 28247272
Alignment:
| Q |
160 |
ttcggtaagcaaatattttgatactcatcatactgatagctagtatcgtaacagcaacatttgattcctagctcaaagccacttaatcatctttggtcta |
259 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28247127 |
ttcggtaagcaaaaattctgatactcatcatactgatatctagtattgtaacagcaacatttgattcctagctcaaagccacttaattatctttggtcta |
28247226 |
T |
|
| Q |
260 |
tatttccaggaattgttaagggaaccatgacaaccacacattccta |
305 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
28247227 |
tatttccaggaatttttaagggaaccatgacaacgacacagtccta |
28247272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 8 - 263
Target Start/End: Original strand, 5076505 - 5076759
Alignment:
| Q |
8 |
agaacaagggtatcacagctgagaatgtcaatacaagatagtgttgtgttttgattgattattcatattcgttcttatgtttcttaatgtacagcaatgc |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||| || ||||||||||||||| |||||||||| || ||||||||||||||||||| |||||| |
|
|
| T |
5076505 |
agaacaagggtatcacaactgagaatgtcaatgcaagataatgatgtgttttgattgat-attcatattcatttttatgtttcttaatgtacaacaatgc |
5076603 |
T |
|
| Q |
108 |
ttcttgcaccacaaactgtcttgctccctttgtgaagatcctggacgaagaattcggtaagcaaatattttgatactcatcatactgatagctagtatcg |
207 |
Q |
| |
|
||| |||||| |||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||||| | |
|
|
| T |
5076604 |
ttcctgcaccgcaaactgtcttgctccctgtgtgaagatcctggatgaaaaattcggtaagcaaaaattctgatactcatcatactgatagctagtattg |
5076703 |
T |
|
| Q |
208 |
taacagcaacatttgattcctagctcaaagccacttaatcatctttggtctatatt |
263 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5076704 |
taacaacaacatttgattcctagctcaaagccacttaattatctttggtctatatt |
5076759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 7412716 - 7412466
Alignment:
| Q |
12 |
caagggtatcacagctgagaatgtcaatacaagatagtgttgtgttttgattgattattcatattcgttcttatgtttcttaatgtacagcaatgcttct |
111 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
7412716 |
caagggtatcacaaatgagaatgtcaatgcaagatagtgctgtgttttgattgat-attcatattcattcttatgtttcttaatgtacagcaatgtttcc |
7412618 |
T |
|
| Q |
112 |
tgcaccacaaactgtcttgctccctttgtgaagatcctggacgaagaattcggtaagcaaatattttgatactcatcatactgatagctagtatcgtaac |
211 |
Q |
| |
|
| |||| |||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
7412617 |
tacaccgcaaactgtcttgctccctgtgtgaagatcctggatgaaaaattcggtaagcaaaaattatgatactcatcatactgatagctagtattgtaac |
7412518 |
T |
|
| Q |
212 |
agcaacatttgattcctagctcaaagccacttaatcatctttggtctatatt |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7412517 |
agcaacatttgattcctagctcaaagccacttaattatctttggtctatatt |
7412466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 661 - 702
Target Start/End: Complemental strand, 11423295 - 11423254
Alignment:
| Q |
661 |
tatcaaacaacttgagctttatttctaaagctcttattttta |
702 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
11423295 |
tatcaaacaactttagctttatttctaaagctctaattttta |
11423254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 663 - 709
Target Start/End: Original strand, 32160608 - 32160654
Alignment:
| Q |
663 |
tcaaacaacttgagctttatttctaaagctcttatttttaattttaa |
709 |
Q |
| |
|
||||||||||| | |||||||| |||| ||||||||||||||||||| |
|
|
| T |
32160608 |
tcaaacaactttaactttatttttaaacctcttatttttaattttaa |
32160654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0810 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0810
Description:
Target: scaffold0810; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 664 - 709
Target Start/End: Original strand, 4671 - 4716
Alignment:
| Q |
664 |
caaacaacttgagctttatttctaaagctcttatttttaattttaa |
709 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
4671 |
caaacaactttagctttacttctaaagcacttatttttaactttaa |
4716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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